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AT1G18980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RmlC-like cupins superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: germin-like protein 4 (TAIR:AT1G18970.1); Has 1578 Blast hits to 1564 proteins in 115 species: Archae - 0; Bacteria - 82; Metazoa - 0; Fungi - 29; Plants - 1449; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW0AeggNOG:ENOG410YKM8EMBL:BT024841EnsemblPlants:AT1G18980
EnsemblPlants:AT1G18980.1entrez:838479ExpressionAtlas:Q29PR5Gene3D:2.60.120.10
GeneID:838479GO:GO:0005576GO:GO:0030145GO:GO:0045735
Gramene:AT1G18980.1hmmpanther:PTHR31238hmmpanther:PTHR31238:SF46InterPro:IPR001929
InterPro:IPR006045InterPro:IPR011051InterPro:IPR014710KEGG:ath:AT1G18980
OMA:LDVSEWPPaxDb:Q29PR5Pfam:PF00190Pfam:Q9LMC9
PhylomeDB:Q29PR5PRIDE:Q29PR5PRINTS:PR00325ProteinModelPortal:Q29PR5
RefSeq:NP_173332.1SMART:SM00835SMR:Q29PR5STRING:3702.AT1G18980.1
SUPFAM:SSF51182TAIR:AT1G18980UniGene:At.41769UniProt:Q29PR5
UniProt:Q9LMC9
Coordinates (TAIR10) chr1:-:6557364..6558026
Molecular Weight (calculated) 23184.90 Da
IEP (calculated) 8.94
GRAVY (calculated) 0.31
Length 220 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTLQISSSL FRSFLLVICV FVIPSLSSDS DPLQDFCVGD LKASPSINGF PCKSSVSASD FFFSGLGGPL NTSTPNGVAV SPANVLTFPG LNTLGLSMNN
101: VEFAPGGVNP PHSHPRATEA GVVIEGSVFV GFLTTNNTLF SKVLNAGEMF VVPRGLVHFQ WNVGKVKARL ITSFNSQLPG SAVLPSTLFG SNPTIPNAVL
201: TKTFRTDDVT VNKLKSKFAV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)