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AT5G24090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24957336 (2014): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chitinase A
Curator
Summary (TAIR10)
Chitinase A (class III) expressed exclusively under environmental stress conditions.
Computational
Description (TAIR10)
chitinase A (CHIA); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to salt stress, response to cold, cellular response to water deprivation, response to wounding, response to light intensity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, chitinase active site (InterPro:IPR001579), Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G24090-MONOMERCAZy:GH18EC:3.2.1.14eggNOG:ENOG4111GPA
eggNOG:KOG4701EMBL:AB006055EMBL:AB006056EMBL:AB006057
EMBL:AB006058EMBL:AB006059EMBL:AB006060EMBL:AB006061
EMBL:AB006062EMBL:AB006063EMBL:AB006064EMBL:AB006065
EMBL:AB006066EMBL:AB006067EMBL:AB006068EMBL:AB006069
EMBL:AB009056EMBL:BT020526EMBL:BT021931EMBL:CP002688
EMBL:M34107EnsemblPlants:AT5G24090EnsemblPlants:AT5G24090.1entrez:832474
Gene3D:3.20.20.80GeneID:832474Genevisible:P19172GO:GO:0000272
GO:GO:0004568GO:GO:0005576GO:GO:0005615GO:GO:0006032
GO:GO:0008061GO:GO:0009409GO:GO:0009611GO:GO:0009642
GO:GO:0009651GO:GO:0042631Gramene:AT5G24090.1hmmpanther:PTHR11177
InParanoid:P19172InterPro:IPR001223InterPro:IPR001579InterPro:IPR013781
InterPro:IPR017853KEGG:00520+3.2.1.14KEGG:ath:AT5G24090KO:K01183
OMA:CTHFGSQPaxDb:P19172Pfam:P19172Pfam:PF00704
Pfscan:PS51257PhylomeDB:P19172PIR:A45511PRIDE:P19172
PRO:PR:P19172PROSITE:PS01095ProteinModelPortal:P19172Proteomes:UP000006548
RefSeq:NP_197797.1scanprosite:PS01095SMR:P19172STRING:3702.AT5G24090.1
SUPFAM:SSF51445TAIR:AT5G24090tair10-symbols:ATCHIAtair10-symbols:CHIA
UniGene:At.43218UniProt:P19172
Coordinates (TAIR10) chr5:-:8143805..8145153
Molecular Weight (calculated) 33098.20 Da
IEP (calculated) 9.27
GRAVY (calculated) -0.23
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MTNMTLRKHV IYFLFFISCS LSKPSDASRG GIAIYWGQNG NEGNLSATCA TGRYAYVNVA FLVKFGNGQT PELNLAGHCN PAANTCTHFG SQVKDCQSRG
101: IKVMLSLGGG IGNYSIGSRE DAKVIADYLW NNFLGGKSSS RPLGDAVLDG IDFNIELGSP QHWDDLARTL SKFSHRGRKI YLTGAPQCPF PDRLMGSALN
201: TKRFDYVWIQ FYNNPPCSYS SGNTQNLFDS WNKWTTSIAA QKFFLGLPAA PEAAGSGYIP PDVLTSQILP TLKKSRKYGG VMLWSKFWDD KNGYSSSILA
301: SV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)