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AT1G26250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Proline-rich extensin-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT4G08370.1); Has 289174 Blast hits to 44674 proteins in 1767 species: Archae - 806; Bacteria - 48932; Metazoa - 103337; Fungi - 38580; Plants - 50919; Viruses - 7655; Other Eukaryotes - 38945 (source: NCBI BLink).
Protein Annotations
EMBL:AC079829EMBL:CP002684EnsemblPlants:AT1G26250EnsemblPlants:AT1G26250.1
entrez:839166GeneID:839166GO:GO:0005199GO:GO:0009664
Gramene:AT1G26250.1InterPro:IPR006706KEGG:ath:AT1G26250OMA:APYVYKP
Pfam:PF04554PIR:G86388Proteomes:UP000006548RefSeq:NP_173949.1
STRING:3702.AT1G26250.1TAIR:AT1G26250UniGene:At.17257UniProt:Q9C669
Coordinates (TAIR10) chr1:+:9083903..9085234
Molecular Weight (calculated) 49337.30 Da
IEP (calculated) 9.34
GRAVY (calculated) -0.79
Length 443 amino acids
Sequence (TAIR10)
(BLAST)
001: MASPNWPSLL MVVLALYSMV AYTSAQYSPT PTPYSPLPPY VYNSPPPYVY NSPSPPPYVY KPPPYIYSSP PPPPYVYSSP PPPPYVYNSP PPPPYVYSSP
101: PPPPYVYKSP PPPPYVYSSP PPPPYVYKSP PPPPYVYSSP PPPPYVYSSP PPPPYVYKSP PPPPYVYSPP PPPPYVYQSP PPPPYVYSSP PPPPYVYKSP
201: PPPPYVYSSP PPPPYVYKSP PPPPYVYSSP PPPPYVYKSP PPPPYVYSSP PPPPYVYKSP PPPPYVYSSP PPPPYVYKSP PPPPYVYSSP PPPPYVYSSP
301: PPPPYVYSSP PPPPYVYKSP PPPPYVYTSP PPPPYVYKSP PPPPYVDSYS PPPAPYVYKP PPYVYKPPPY VYNYSPPPAP YVYKPPPYVY SYSPPPAPYV
401: YKPPPYVYSY SPPPAPYVYK PPPYVYSSPS PPPYYSSPSP PLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)