AT1G29020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.889 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Calcium-binding EF-hand family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: root, callus; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G29025.1); Has 483 Blast hits to 315 proteins in 72 species: Archae - 8; Bacteria - 1; Metazoa - 61; Fungi - 5; Plants - 330; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:10120497..10122902 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63408.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.13 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.41 | ||||||||||||||||||||||||||||||||||||
| Length | 564 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARLSLFLSF LSLIALISVV NCRVLSSLSE KDSILVSDGV QDGSSYEFLS LDPPNDITKN MCVHVYDFLP CADNVAGYVF QVFSFGCILI IGEYFLTKGR 101: TKLFLIFEVG FYGGIIFPLL TMFPRIALIL STGLVGSREM ASSRVGNIIG VTVGYSVFAL TIQWGACILF GLSGTKPEQP IDLSAASVEA DITNKKSAGI 201: MLLTILPFIL VTFSEISSSQ YWNDIIVLIT LIISASATFA YFFYSYFDRD DQAKSLDHAR FELMSEVHKH LQIFSPKSLI RDGQLNQESL KRLFQKIDAN 301: GDGKIQVAEL KDLTVEFGMI GRVKCHIDKL VHTLVDDFDR DGDREIDEAE FEIGIKKWLN QYKFSFDTTV PPREDQAEGV PILKVEKPEQ SLVKKLLSWR 401: TLRASLEVIL GMLVVIYLAR PFMMNIQLLS ESAGVPSFYV VFVVIPLARN LKNTLSAHFC RKKDKAKITS DTFSEIYKDV TMNNLMGISI ILAIVYAREL 501: VWDYTTEVLI IVIVGLLIGL PAYVRTTYPF WICLLAFALY FISLVVVYFH FMSLEKGTTV TFNK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)