AT3G46270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor protein kinase-related | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G46280.1); Has 3538 Blast hits to 1609 proteins in 216 species: Archae - 2; Bacteria - 529; Metazoa - 1458; Fungi - 254; Plants - 829; Viruses - 17; Other Eukaryotes - 449 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:17000887..17004237 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50467.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.75 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||
| Length | 470 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESPHGVLLL AFISTLAIVH LVQAQDQKGI SIDCGTTGSY VDSNNVTWVG DKGFVTTGES INITDVTTKP INTLRYFPTG QTNCYTNIPV TKGRKTLVRT 101: KYYYENYDDK FSPPSFDIVY DGKHRDSVDI TESLLDDEDT FYFSEVIFAP ASENISVCLL RTSPSDNPFI SSIEVYSFDD GMYKDLGPEE GLILYQRITY 201: GAKKLISYPL DPFGRLWSPS ASGDNTALTD LSTSAPSIDI TGASNKPPEI VMSKALSGDG LIISDLPLPS TATLVYLALY FSEPQSLGRT QKRSFNVFLD 301: DMQVGSHPIV PVFGKATQLV LRDVEATSGS QIVLKSTDDS VLPTMINGLE LYSISNNQHG GSGGKSGGGD NGGGGGQSGG GNNGGTNLKG GKKKNSLPLI 401: LGVTFASVFV ILWSAFVVNI LRKRQNAKPV SNTAPTTSTE RGIGTGTSPL FGQEMASDTN DSYVVQNEQH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)