AT2G28970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G28990.1); Has 169810 Blast hits to 124514 proteins in 4517 species: Archae - 105; Bacteria - 13883; Metazoa - 45515; Fungi - 10149; Plants - 80466; Viruses - 403; Other Eukaryotes - 19289 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:12443919..12448163 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87293.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.46 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 786 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMSHLLLAII GTFAVIVGAQ KQEGFISLDC GFPIEESPYS DPSTGLTFTS DSTFIQTGES GRVDKELNKI FRKPYLTLRY FPEGKRNCSL RNSFRVHCST 101: SDSEIRYDDD SYDRVWYPFF SSSFSYITTS LNINNSDTFE IPKAALKSAA TPKNASAPLI ITWKPRPSNA EVYFYLHFAE IQTLAANETR EFDIVFKGNF 201: NYSAFSPTKL ELLTFFTSGP VQCDSDGCNL QLVRTPNSTL PPLINALEAY TIIEFPQLET SLSDVNAIKN IKATYRLSKT SWQGDPCLPQ ELSWENLRCS 301: YTNSSTPPKI ISLNLSASGL TGSLPSVFQN LTQIQELDLS NNSLTGLVPS FLANIKSLSL LDLSGNNFTG SVPQTLLDRE KEGLVLKLEG NPELCKFSSC 401: NPKKKKGLLV PVIASISSVL IVIVVVALFF VLRKKKMPSD AQAPPSLPVE DVGQAKHSES SFVSKKIRFA YFEVQEMTNN FQRVLGEGGF GVVYHGCVNG 501: TQQVAVKLLS QSSSQGYKHF KAEVELLMRV HHKNLVSLVG YCDEGDHLAL IYEYMPNGDL KQHLSGKRGG FVLSWESRLR VAVDAALGLE YLHTGCKPPM 601: VHRDIKSTNI LLDERFQAKL ADFGLSRSFP TENETHVSTV VAGTPGYLDP EYYQTNWLTE KSDVYSFGIV LLEIITNRPI IQQSREKPHL VEWVGFIVRT 701: GDIGNIVDPN LHGAYDVGSV WKAIELAMSC VNISSARRPS MSQVVSDLKE CVISENSRTG ESREMNSMSS IEFSMGIDTE VIPKAR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)