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AT4G25090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Riboflavin synthase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Riboflavin synthase-like superfamily protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: oxidation reduction; LOCATED IN: cytosolic ribosome, vacuole; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: NADPH/respiratory burst oxidase protein D (TAIR:AT5G51060.1); Has 2591 Blast hits to 2460 proteins in 416 species: Archae - 12; Bacteria - 368; Metazoa - 707; Fungi - 773; Plants - 526; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G25090-MONOMEREC:1.11.1.-EC:1.6.3.-eggNOG:ENOG410XNZY
eggNOG:KOG0039EMBL:AL035523EMBL:AL161562EMBL:CP002687
EnsemblPlants:AT4G25090EnsemblPlants:AT4G25090.1entrez:828612ExpressionAtlas:Q9SW17
Gene3D:1.10.238.10GeneID:828612Genevisible:Q9SW17GO:GO:0004601
GO:GO:0005509GO:GO:0005773GO:GO:0016021GO:GO:0022626
GO:GO:0050664hmmpanther:PTHR11972hmmpanther:PTHR11972:SF64InParanoid:Q9SW17
InterPro:IPR000778InterPro:IPR002048InterPro:IPR011992InterPro:IPR013112
InterPro:IPR013121InterPro:IPR013130InterPro:IPR013623InterPro:IPR017927
InterPro:IPR017938InterPro:IPR018247iPTMnet:Q9SW17ncoils:Coil
OMA:HFDKDTDPaxDb:Q9SW17PeroxiBase:3285Pfam:PF01794
Pfam:PF08022Pfam:PF08030Pfam:PF08414Pfam:Q9SW17
Pfscan:PS50222Pfscan:PS51384PIR:T05530PRIDE:Q9SW17
PRINTS:PR00466PRO:PR:Q9SW17PROSITE:PS00018PROSITE:PS50222
PROSITE:PS51384ProteinModelPortal:Q9SW17Proteomes:UP000006548Reactome:R-ATH-209968
RefSeq:NP_194239.2scanprosite:PS00018SMR:Q9SW17STRING:3702.AT4G25090.1
SUPFAM:SSF47473SUPFAM:SSF52343SUPFAM:SSF63380TAIR:AT4G25090
TMHMM:TMhelixUniGene:At.2651UniProt:Q9SW17
Coordinates (TAIR10) chr4:-:12878930..12883599
Molecular Weight (calculated) 96867.80 Da
IEP (calculated) 9.41
GRAVY (calculated) -0.20
Length 849 amino acids
Sequence (TAIR10)
(BLAST)
001: MQRVSFEVKD TEAEKSSSEI LSGSLPSTYR NPAMENVGNA VDDGSSVKNN PKLDMQKQNG LVKWFKKCLT MVSGESKAPR LDRSKSTAGQ ALKGLKIISK
101: TDGNAAWTVV EKRYLKITAN TDGLLLRSKF GECIGMNSKE FALELFDALA RKSHLKGDVI TETELKKFWE QINDKSFDSR LITFFDLMDK DSDGRLTEDE
201: VREIIKLSSS ANHLSCIQNK ADEYAAMIME ELDPDHMGYI MMESLKKLLL QAETKSVSTD INSEERKELS DMLTESLKPT RDPNHLRRWY CQLRFFVLDS
301: WQRVWVIALW LTIMAILFAY KYIQYKNRAV YEVLGPCVCL AKGAAETLKL NMALILLPVC RNTITWLRNK TRLGVFVPFD DNLNFHKVIA VGIAIGVAIH
401: SVSHLACDFP LLIAATPAEY MPLGKFFGEE QPKRYLHFVK STEGITGLVM VFLMVIAFTL AMPWFRRGKL EKKLPGPLKK LASFNAFWYT HHLFVIVYIL
501: LVLHGYYIYL NKEWYKKTTW MYLAVPVALY AYERLIRAFR SSIRTVKVLK MAAYPGKVLT LQMSKPTNFK YMSGQYMFVN CPAVSPFEWH PFSITSTPQD
601: DYLSVHIKAL GDWTEAIQGV FSEVSKPPPV GDMLNGANSP RFPKIMIDGP YGAPAQDYKK YEVVLLIGLG IGATPMISII KDIINNTETK EQLSQMEKGS
701: PQEQQGNKET FKTRRAYFYW VTKEQGTFDW FKNIMNEIAE RDKSKVIELH NHCTSVYEEG DVRSALIRML QSLNYAKNGL DIVAGTRVMS HFARPNWKNV
801: YKQIAMDHPG ANVGVFYCGA PVLTKELRQL ALEFTHKTST RFSFHKENF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)