AT3G23190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HR-like lesion-inducing protein-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HR-like lesion-inducing protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: hypocotyl, root, callus; CONTAINS InterPro DOMAIN/s: HR-like lesion-inducer (InterPro:IPR008637); BEST Arabidopsis thaliana protein match is: HR-like lesion-inducing protein-related (TAIR:AT3G23180.1); Has 132 Blast hits to 132 proteins in 21 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:8279445..8280663 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 24496.90 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.54 | ||||||||||||||||||||||||
| GRAVY (calculated) | 0.15 | ||||||||||||||||||||||||
| Length | 216 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKTQESVVR YGKKIEKMPY LMPAGRVVFA SAFLVSAWRE YYGFGLAADE LRPKLGFFEN QAKAIVALGI LMKFVGGILF IFNTYVGAAL LLVYQAILSP 101: ILYDFYNRDY DRDHFTVFYT KFKEFVEETT SADGGVAMSL YTSVVNEESR QKFIDQLNEI ARIAISNPLF TPSDFNTLFI RFIKGVGIAA ALACFIAMKH 201: RHAVLIEKTS KKQKTN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)