suba logo
AT3G54040.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PAR1 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PAR1 protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: PAR1 (InterPro:IPR009489); BEST Arabidopsis thaliana protein match is: PAR1 protein (TAIR:AT5G52390.1); Has 82 Blast hits to 82 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY28eggNOG:ENOG410YH1NEMBL:AL132960EMBL:AY072404
EMBL:AY114703EMBL:CP002686EnsemblPlants:AT3G54040EnsemblPlants:AT3G54040.1
entrez:824571GeneID:824571Gramene:AT3G54040.1hmmpanther:PTHR33649
hmmpanther:PTHR33649:SF4HOGENOM:HOG000272679InterPro:IPR009489KEGG:ath:AT3G54040
OMA:CEVHRANPfam:PF06521PhylomeDB:Q9LCZ9Proteomes:UP000006548
RefSeq:NP_190972.1TAIR:AT3G54040UniGene:At.23194UniProt:Q9LCZ9
Coordinates (TAIR10) chr3:-:20014032..20015299
Molecular Weight (calculated) 19110.90 Da
IEP (calculated) 4.09
GRAVY (calculated) 0.31
Length 183 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFSSLKLPI FLILSSLLHA AIGENIVCEN LPTNMCSFSI SASGKRCILE TANVAGEFTC RTSAVDVEGI VNHVETDECV SACGVDRKTV GISSDSLMEA
101: GFAAKLCSSA CLDYCPNILD LYFNLAAGEG AFLPDLCDAQ RMNPQRSMME FISSGAAPGP VSEIAPGPTS EEVSSPALAP ASM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)