AT5G49780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: shoot, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G49760.1); Has 183125 Blast hits to 134769 proteins in 4858 species: Archae - 153; Bacteria - 18167; Metazoa - 52558; Fungi - 10368; Plants - 80336; Viruses - 459; Other Eukaryotes - 21084 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:20229499..20233095 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 95039.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.38 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 857 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGCGFSGQIP ESIGSLEQLV TLSLNSNKFN GTIPASIGLL SKLYWFDIAD NQIEGKLPVS DGASLPGLDM LLQTKHFHFG KNKLSGDIPE KLFSANMTLK 101: HLLFDGNLLT GEIPQSLSLV KTLTVLRLDR NRLSGEIPPS LNNLTNLQEL YLSDNKFTGS LPSLTSLTSL STLAVSNNRL TSSQISSWIS LLPTSLATLR 201: MAGLQLQGPI PTSLFSLPEL QTVILKRNWL NETLDFGTNK SQNLDFVDLQ YNDITEYIKQ PANKGSSRIV ILANNPVCPE VGNPPNEYCI EVEHNSSYSS 301: PKNTCGRCSG EDREPIPTTC RCVYPITGTL TFRSPSFSGY SNNDTFENLR LNLTGFFENR NYTVDSVAIR NIREDEDDHY LLIDLSLFPY KQDRFNETGM 401: DSVISRFSTQ TYKPPNTFGP YIFKANKYNK FPAGGSNSSH IIGAVVGSTV FLLILMIAGI YALKQKRRAE KANDQINPFG KDVLLSGKTD KILIAFFLYV 501: TAKWDANQNS VDAPQLMGTK AFTFEEMRKC ANNFSVANDV GGGGYGQVYK GILPSGQLIA IKRAQPGSLQ GALEFKTEIE LLSRVHHKNV VKLLGFCFDR 601: GEQMLVYEYI PNGSLRDSLS GKSGIRLDWT RRLRIALGSG KGLAYLHELA DPPIIHRDVK SSNVLLDESL TAKVADFGLS QLVEDAEKAN VTAQVKGTMG 701: YLDPEYYMTN QLTEKSDVYG FGVMMLELLT GKIPIENGKY VVKEMKMKMN KSKNLYDLQD FLDTTISATS NRNLKGFEKY VDVALRCVDP EGVKRPSMNE 801: VVKEIENIMQ YAGLNPNVES YASSRTYDEA SKESGDLYGN NSFEYSASFP TTNLEPQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)