AT5G59680.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 0.969 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Leucine-rich repeat protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G59650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:24046792..24050801 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 98374.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 887 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MERSLELLLL LIRTLAIIHI SQAQSQQGFI SLDCGLPANE PSPYTEPRTG LQFSSDAAFI QSGKIGRIQA NLEADFLKPS TTMRYFPDGK RNCYNLNVEK 101: GRNHLIRARF VYGNYDGRDT GPKFDLYLGP NPWATIDLAK QVNGTRPEIM HIPTSNKLQV CLVKTGETTP LISVLEVRPM GSGTYLTKSG SLKLYYREYF 201: SKSDSSLRYP DDIYDRQWTS FFDTEWTQIN TTSDVGNSND YKPPKVALTT AAIPTNASAP LTNEWSSVNP DEQYYVYAHF SEIQELQANE TREFNMLLNG 301: KLFFGPVVPP KLAISTILSV SPNTCEGGEC NLQLIRTNRS TLPPLLNAYE VYKVIQFPQL ETNETDVSAV KNIQATYELS RINWQSDPCV PQQFMWDGLN 401: CSITDITTPP RITTLNLSSS GLTGTITAAI QNLTTLEKLD LSNNNLTGEV PEFLSNMKSL LVINLSGNDL NGTIPQSLQR KGLELLYQGN PRLISPGSTE 501: TKSGKSFPVT IVASVGSAAI LIVVLVLVLF LRKKKPSAVE VVLPRPSRPT MNVPYANSPE PSIEMKKRKF TYSEVTKMTN NFGRVVGEGG FGVVCHGTVN 601: GSEQVAVKLL SQSSTQGYKE FKAEVDLLLR VHHTNLVSLV GYCDEGDHLA LIYEFVPNGD LRQHLSGKGG KPIVNWGTRL RIAAEAALGL EYLHIGCTPP 701: MVHRDVKTTN ILLDEHYKAK LADFGLSRSF PVGGESHVST VIAGTPGYLD PEYYHTSRLS EKSDVYSFGI VLLEMITNQA VIDRNRRKSH ITQWVGSELN 801: GGDIAKIMDL KLNGDYDSRS AWRALELAMS CADPTSARRP TMSHVVIELK ECLVSENSRR NMSRGMDTLS SPEVSMIFDA EMIPRAR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)