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AT1G07620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GTP-binding protein Obg/CgtA
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATOBGM; FUNCTIONS IN: magnesium ion binding, GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GTP-binding protein Obg/CgtA (InterPro:IPR014100); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT5G02390.1); Has 561 Blast hits to 511 proteins in 87 species: Archae - 0; Bacteria - 20; Metazoa - 47; Fungi - 31; Plants - 219; Viruses - 2; Other Eukaryotes - 242 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE3ZeggNOG:ENOG410YHUXEMBL:AC007583EMBL:AK175139
EMBL:CP002684EnsemblPlants:AT1G07620EnsemblPlants:AT1G07620.1entrez:837275
GeneID:837275Gramene:AT1G07620.1hmmpanther:PTHR21726hmmpanther:PTHR21726:SF39
InParanoid:F4HSD5InterPro:IPR025486iPTMnet:F4HSD5KEGG:ath:AT1G07620
OMA:DEMICVYPaxDb:F4HSD5Pfam:F4HSD5Pfam:PF14309
PIR:F86210PRIDE:F4HSD5PRO:PR:F4HSD5ProteinModelPortal:F4HSD5
Proteomes:UP000006548RefSeq:NP_172241.2STRING:3702.AT1G07620.1TAIR:AT1G07620
tair10-symbols:ATOBGMUniGene:At.49301UniProt:F4HSD5
Coordinates (TAIR10) chr1:-:2344556..2346374
Molecular Weight (calculated) 63908.20 Da
IEP (calculated) 6.53
GRAVY (calculated) -0.92
Length 552 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKHLKNESS SPNHGKYNHK LGWLAGMLHV LDFHHWRTKN RPICWKTPRT HSLMRETEEQ EPFLDSKIND SKMLSVVADN KPTRPETKLK KTMTTKQVTE
101: YVDFLEILRK EDVFVKIMKD QVQIKSNPRV LPKSGSFPIS GSSRPARIQH KQKENWYAPK QNGAVLTLKV PRDTSQECKP ISPSHGSADD DHGFNHAIIN
201: GFREIKKLLK NTLKDRNRTK KKKKKKVLDV AKDDYVGRYS QLLKQISRRE GGDLRSKSLK LSYEEKKSDS RDNKPQFFRR ISSLSSLEVL GSFLTDLPRD
301: SSTSNQETRI SEDQDTNFGA KKSVLSSESP VRAEKEEKYE VQEERSQENH LDSSNQRILQ QEPDSVPSTN KTAEKTETLL PQGLGLSSLE IYKHEEEDED
401: AYFCYVKKVL KVSGFLENKD NEEKWYSEEQ PLNPSLLYEL DIQEEETVND KELLFDLVNE AIVETQNHSQ IYFPKTFPYG KRYLDEVWGR VEWSLSGLGA
501: ENRDRSLDDI VGRDLLTKSD GWMNLQGESE WLTLELEDLI FDDVLDELLC VY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)