suba logo
AT3G07195.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RPM1-interacting protein 4 (RIN4) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RPM1-interacting protein 4 (RIN4) family protein; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: defense protein-related (TAIR:AT5G48657.2); Has 4930 Blast hits to 4046 proteins in 465 species: Archae - 6; Bacteria - 1879; Metazoa - 1598; Fungi - 263; Plants - 594; Viruses - 25; Other Eukaryotes - 565 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XV78eggNOG:KOG0320EMBL:AK221744EMBL:BT012187
EMBL:CP002686EnsemblPlants:AT3G07195EnsemblPlants:AT3G07195.1entrez:819907
GeneID:819907Gramene:AT3G07195.1HOGENOM:HOG000030266InterPro:IPR008700
KEGG:ath:AT3G07195OMA:FTVVFDNPfam:PF05627PhylomeDB:Q6NLZ1
Proteomes:UP000006548RefSeq:NP_683537.1STRING:3702.AT3G07195.1TAIR:AT3G07195
UniGene:At.50158UniProt:Q6NLZ1
Coordinates (TAIR10) chr3:+:2288959..2290309
Molecular Weight (calculated) 24014.80 Da
IEP (calculated) 10.52
GRAVY (calculated) -1.19
Length 225 amino acids
Sequence (TAIR10)
(BLAST)
001: MANRPHVPKF GDWNNQDQPF TVVFDNARTN KRQDLYESIE KPETKPQELA PPPPQPARRI QKPEAPKPVK QDTPRAPPPT EKNRVKAPPA DQLYGGGGSG
101: GGGRSGSGSA GGLYGGYGGG SVGNQRQPPA PRPTQPRQNL RGGNNGRGGT TIPPFPGSVG AGGDMSYTQI FEKVKEERNE GVIRPNGGTA GNTPSRPINS
201: QHDQSTNQTS SKGCCFSWCR RGSKY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)