AT4G38550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.959 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Arabidopsis phospholipase-like protein (PEARLI 4) family | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Arabidopsis phospholipase-like protein (PEARLI 4) family; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT2G20950.1); Has 2973 Blast hits to 2400 proteins in 345 species: Archae - 8; Bacteria - 147; Metazoa - 1113; Fungi - 821; Plants - 590; Viruses - 45; Other Eukaryotes - 249 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:18025886..18028546 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69685.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.66 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.10 | ||||||||||||||||||||||||||||||||
| Length | 612 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDFFTSSKAK KDSKKSSGLF GKKTVSKSTP GSPAHPPGAR SPPPSYLSNK RAETEYDFPM SNEQRPYWKQ PASERVPNSH PRPPVYGYGT PDHRRDHGRE 101: RMEAMSYEPE TNAPSSPYHP AGNRTPERPR KSTEYRREHQ DRMYEADTRS NASPFHPFRS PSPSPFHTPD RRRDHYDMYE PEANTMLQNS APGSPFHPAG 201: SRSPPPYRTP DRRSNYDKEQ FEDLYEQDGD VTPRNSSPPS PFHPAAYKTS DQRSNHGKEQ IEDFYEQDDD VTPRNSSPPS PLHPAASHSP PPPQPYRTPD 301: HRRSHQDNED FEAMYELDGD LIHQKSAPPS PVHGPYYSSS DDDNHSTYLY PEIRSPLRSR IVSENSTPVH HNYQIVAAET YEQDKQFEPP ELPDESQSFT 401: MQEITKMRGL KNYESGKEES QSMISEAYVS VANYRVRQSV SETLQAIIDK HGDIAASSKL QAMATRSYYL ESLAAVVMEL KKTVLRDLTK TRVAEIAAVV 501: KDMESVKINV SWLKTAVTEL AEAVEYFGQY DTAKVEKEVC ERDLTAKKGE MEEMTAELVK REKEIKECRE KVTVVAGRLG QLEMKGSKLN KNLDLFQSKV 601: HKFQGEAVLL HL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)