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AT5G67450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : zinc-finger protein 1
Curator
Summary (TAIR10)
Encodes zinc-finger protein. mRNA levels are elevated in response to low temperature, cold temperatures and high salt. The protein is localized to the nucleus and acts as a transcriptional repressor.
Computational
Description (TAIR10)
zinc-finger protein 1 (ZF1); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT3G49930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5048eggNOG:KOG1721EMBL:AB007645EMBL:AB030731
EMBL:AK227608EMBL:AY123328EMBL:BT003064EMBL:CP002688
EnsemblPlants:AT5G67450EnsemblPlants:AT5G67450.1entrez:836881Gene3D:3.30.160.60
GeneID:836881Genevisible:Q9SSW1GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009409GO:GO:0009738
GO:GO:0010200GO:GO:0042538GO:GO:0043565GO:GO:0045892
GO:GO:0046872Gramene:AT5G67450.1hmmpanther:PTHR26374hmmpanther:PTHR26374:SF208
InParanoid:Q9SSW1InterPro:IPR007087InterPro:IPR013087InterPro:IPR015880
KEGG:ath:AT5G67450OMA:ESAIGGHPaxDb:Q9SSW1Pfam:PF13912
Pfam:Q9SSW1Pfscan:PS50157PhylomeDB:Q9SSW1PRO:PR:Q9SSW1
PROSITE:PS00028PROSITE:PS50157ProteinModelPortal:Q9SSW1Proteomes:UP000006548
RefSeq:NP_201546.1scanprosite:PS00028SMART:SM00355SMR:Q9SSW1
STRING:3702.AT5G67450.1SUPFAM:SSF57667TAIR:AT5G67450tair10-symbols:AZF1
tair10-symbols:ZF1UniGene:At.6501UniProt:Q9SSW1
Coordinates (TAIR10) chr5:-:26919142..26919879
Molecular Weight (calculated) 26472.50 Da
IEP (calculated) 7.89
GRAVY (calculated) -0.78
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MALETLNSPT ATTTARPLLR YREEMEPENL EQWAKRKRTK RQRFDHGHQN QETNKNLPSE EEYLALCLLM LARGSAVQSP PLPPLPSRAS PSDHRDYKCT
101: VCGKSFSSYQ ALGGHKTSHR KPTNTSITSG NQELSNNSHS NSGSVVINVT VNTGNGVSQS GKIHTCSICF KSFASGQALG GHKRCHYDGG NNGNGNGSSS
201: NSVELVAGSD VSDVDNERWS EESAIGGHRG FDLNLPADQV SVTTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)