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AT2G39210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G28120.1); Has 3072 Blast hits to 2927 proteins in 685 species: Archae - 32; Bacteria - 1223; Metazoa - 36; Fungi - 288; Plants - 601; Viruses - 0; Other Eukaryotes - 892 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK49eggNOG:ENOG410Y8WVEMBL:AC004697EMBL:AF419593
EMBL:CP002685EnsemblPlants:AT2G39210EnsemblPlants:AT2G39210.1entrez:818506
GeneID:818506GO:GO:0009506GO:GO:0016021GO:GO:0050832
GO:GO:0055085Gramene:AT2G39210.1hmmpanther:PTHR21576hmmpanther:PTHR21576:SF40
HOGENOM:HOG000240321InterPro:IPR010658InterPro:IPR011701InterPro:IPR020846
KEGG:ath:AT2G39210OMA:MWIGANSPfam:PF06813Pfam:PF07690
PhylomeDB:O80960PIR:T02581Proteomes:UP000006548RefSeq:NP_181454.1
STRING:3702.AT2G39210.1SUPFAM:SSF103473TAIR:AT2G39210TMHMM:TMhelix
UniGene:At.27387UniProt:O80960
Coordinates (TAIR10) chr2:-:16366287..16368231
Molecular Weight (calculated) 66048.80 Da
IEP (calculated) 9.10
GRAVY (calculated) 0.51
Length 601 amino acids
Sequence (TAIR10)
(BLAST)
001: MVAASPGGSM KSLTIQILTG RWFMFFGSLL IMSTAGATYM FGIYSGDIKE TLGYDQTTLN LLSFFKDLGA NVGVLAGLLN EVTPPWFILL IGAILNFFGY
101: FMIWLAVTER ISKPQVWHMC LYICVGANSQ SFANTGSLVT CVKNFPESRG VVLGILKGYV GLSGAIITQL YRAFYGEDTK ELILMIGWLP AIVSFAFLRT
201: IRIMKVKRQT NELKVFYNFL YISLGLATFL MVVIIINKLS GFTQSEFGGS AAVVIVLLLL PIIVVILEEK KLWKEKQVAL NDPAPINVVT EKPKLDSSEF
301: KDDDGEESKE VVEKVKTPSC WTTVFNPPER GDDYTILQAL FSVDMLILFL ATICGVGGTL TAIDNLGQIG NSLGYPKRSV STFVSLVSIW NYYGRVVSGV
401: VSEIFLIKYK FPRPLMLTMV LLLSCAGHLL IAFNVPGGLY VASVIIGFCF GAQWPLLFAI ISEIFGLKYY STLYNFGSVA SPIGSYLLNV RVAGYLYDVE
501: AGKQYKALGK TRVEGQDLNC IGTSCFKLSF IIIAAVTLFG VLVSMVLVIR TKKFYKSDIY KKFREKALAA EMEMAAPAAA RSTVAKEDKD DVKGKVIGKG
601: G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)