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AT5G40780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : lysine histidine transporter 1
Curator
Summary (TAIR10)
Encodes LHT1 (lysine histidine transporter), a high-affinity transporter for cellular amino acid uptake in both root epidermis and leaf mesophyll.
Computational
Description (TAIR10)
lysine histidine transporter 1 (LHT1); FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, response to karrikin, amino acid import; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT1G48640.1); Has 4138 Blast hits to 4131 proteins in 350 species: Archae - 7; Bacteria - 208; Metazoa - 1178; Fungi - 615; Plants - 1652; Viruses - 0; Other Eukaryotes - 478 (source: NCBI BLink).
Protein Annotations
BioGrid:19329eggNOG:COG0814eggNOG:KOG1303EMBL:AB011477
EMBL:AB015470EMBL:AF367281EMBL:AY133550EMBL:CP002688
EMBL:U39782EnsemblPlants:AT5G40780EnsemblPlants:AT5G40780.1entrez:834078
GeneID:834078Genevisible:Q9FKS8GO:GO:0003333GO:GO:0005886
GO:GO:0015171GO:GO:0015293GO:GO:0016021GO:GO:0043090
GO:GO:0080167hmmpanther:PTHR22950hmmpanther:PTHR22950:SF235HOGENOM:HOG000241295
InParanoid:Q9FKS8InterPro:IPR013057KEGG:ath:AT5G40780OMA:HELVCED
PaxDb:Q9FKS8Pfam:PF01490Pfam:Q9FKS8PhylomeDB:Q9FKS8
PRIDE:Q9FKS8PRO:PR:Q9FKS8ProteinModelPortal:Q9FKS8Proteomes:UP000006548
RefSeq:NP_198894.2RefSeq:NP_851109.1STRING:3702.AT5G40780.1TAIR:AT5G40780
tair10-symbols:LHT1TCDB:2.A.18.2.2TMHMM:TMhelixUniGene:At.10818
UniProt:Q9FKS8
Coordinates (TAIR10) chr5:+:16323823..16327082
Molecular Weight (calculated) 49816.40 Da
IEP (calculated) 8.96
GRAVY (calculated) 0.48
Length 446 amino acids
Sequence (TAIR10)
(BLAST)
001: MVAQAPHDDH QDDEKLAAAR QKEIEDWLPI TSSRNAKWWY SAFHNVTAMV GAGVLGLPYA MSQLGWGPGI AVLVLSWVIT LYTLWQMVEM HEMVPGKRFD
101: RYHELGQHAF GEKLGLYIVV PQQLIVEIGV CIVYMVTGGK SLKKFHELVC DDCKPIKLTY FIMIFASVHF VLSHLPNFNS ISGVSLAAAV MSLSYSTIAW
201: ASSASKGVQE DVQYGYKAKT TAGTVFNFFS GLGDVAFAYA GHNVVLEIQA TIPSTPEKPS KGPMWRGVIV AYIVVALCYF PVALVGYYIF GNGVEDNILM
301: SLKKPAWLIA TANIFVVIHV IGSYQIYAMP VFDMMETLLV KKLNFRPTTT LRFFVRNFYV AATMFVGMTF PFFGGLLAFF GGFAFAPTTY FLPCVIWLAI
401: YKPKKYSLSW WANWVCIVFG LFLMVLSPIG GLRTIVIQAK GYKFYS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)