AT5G40780.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : lysine histidine transporter 1 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes LHT1 (lysine histidine transporter), a high-affinity transporter for cellular amino acid uptake in both root epidermis and leaf mesophyll. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
lysine histidine transporter 1 (LHT1); FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, response to karrikin, amino acid import; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT1G48640.1); Has 4138 Blast hits to 4131 proteins in 350 species: Archae - 7; Bacteria - 208; Metazoa - 1178; Fungi - 615; Plants - 1652; Viruses - 0; Other Eukaryotes - 478 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr5:+:16323823..16327082 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 49816.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.96 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.48 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 446 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVAQAPHDDH QDDEKLAAAR QKEIEDWLPI TSSRNAKWWY SAFHNVTAMV GAGVLGLPYA MSQLGWGPGI AVLVLSWVIT LYTLWQMVEM HEMVPGKRFD 101: RYHELGQHAF GEKLGLYIVV PQQLIVEIGV CIVYMVTGGK SLKKFHELVC DDCKPIKLTY FIMIFASVHF VLSHLPNFNS ISGVSLAAAV MSLSYSTIAW 201: ASSASKGVQE DVQYGYKAKT TAGTVFNFFS GLGDVAFAYA GHNVVLEIQA TIPSTPEKPS KGPMWRGVIV AYIVVALCYF PVALVGYYIF GNGVEDNILM 301: SLKKPAWLIA TANIFVVIHV IGSYQIYAMP VFDMMETLLV KKLNFRPTTT LRFFVRNFYV AATMFVGMTF PFFGGLLAFF GGFAFAPTTY FLPCVIWLAI 401: YKPKKYSLSW WANWVCIVFG LFLMVLSPIG GLRTIVIQAK GYKFYS |
||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)