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AT5G37600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24748391 (2014): plastid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : glutamine synthase clone R1
Curator
Summary (TAIR10)
encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium
Computational
Description (TAIR10)
glutamine synthase clone R1 (GSR 1); FUNCTIONS IN: glutamate-ammonia ligase activity, copper ion binding; INVOLVED IN: nitrate assimilation, response to fructose stimulus, response to light stimulus, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: cytosol, cytosolic ribosome, cell wall, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic domain (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic domain (InterPro:IPR014746); BEST Arabidopsis thaliana protein match is: glutamine synthase clone F11 (TAIR:AT1G66200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:18989BRENDA:6.3.1.2EC:6.3.1.2eggNOG:COG0174
eggNOG:KOG0683EMBL:AB018107EMBL:AF419608EMBL:AF428386
EMBL:AK222005EMBL:AY079113EMBL:BT000753EMBL:CP002688
EnsemblPlants:AT5G37600EnsemblPlants:AT5G37600.1entrez:833738Gene3D:3.30.590.10
GeneID:833738Genevisible:Q56WN1GO:GO:0004356GO:GO:0005507
GO:GO:0005524GO:GO:0005618GO:GO:0005829GO:GO:0005886
GO:GO:0006542GO:GO:0009399GO:GO:0009506GO:GO:0010150
GO:GO:0022626GO:GO:0042128Gramene:AT5G37600.1hmmpanther:PTHR20852
hmmpanther:PTHR20852:SF59HOGENOM:HOG000061500InParanoid:Q56WN1IntAct:Q56WN1
InterPro:IPR008146InterPro:IPR008147InterPro:IPR014746InterPro:IPR027302
InterPro:IPR027303iPTMnet:Q56WN1KEGG:00220+6.3.1.2KEGG:00250+6.3.1.2
KEGG:00630+6.3.1.2KEGG:00910+6.3.1.2KEGG:ath:AT5G37600KO:K01915
MINT:MINT-8062724OMA:KKHNEHIPaxDb:Q56WN1Pfam:PF00120
Pfam:PF03951Pfam:Q56WN1PhylomeDB:Q56WN1PIR:S18601
PRIDE:Q56WN1PRO:PR:Q56WN1PROSITE:PS00180PROSITE:PS00181
ProteinModelPortal:Q56WN1Proteomes:UP000006548Reactome:R-ATH-210455Reactome:R-ATH-70614
RefSeq:NP_198576.1SABIO-RK:Q56WN1scanprosite:PS00180scanprosite:PS00181
SMART:SM01230SMR:Q56WN1STRING:3702.AT5G37600.1SUPFAM:SSF54368
SUPFAM:SSF55931TAIR:AT5G37600tair10-symbols:ATGLN1;1tair10-symbols:ATGSR1
tair10-symbols:GLN1;1tair10-symbols:GSR 1UniGene:At.7003UniProt:Q56WN1
Coordinates (TAIR10) chr5:-:14933574..14935656
Molecular Weight (calculated) 39117.20 Da
IEP (calculated) 5.12
GRAVY (calculated) -0.39
Length 356 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLVSDLINL NLSDSTDKII AEYIWVGGSG MDMRSKARTL PGPVTDPSQL PKWNYDGSST GQAPGEDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AKVFSNPDVA AEVPWYGIEQ EYTLLQKDVK WPVGWPIGGY PGPQGPYYCG IGADKSFGRD VVDSHYKACL YAGINISGIN GEVMPGQWEF
201: QVGPAVGISA ADEIWVARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHC NYSTKSMREE GGYEIIKKAI DKLGLRHKEH IAAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YIVTSMIAET TILWNP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)