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AT1G64170.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.597
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23430044 (2013): endoplasmic reticulum
  • PMID:23430044 (2013): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cation/H+ exchanger 16
Curator
Summary (TAIR10)
member of Putative Na+/H+ antiporter family
Computational
Description (TAIR10)
cation/H+ exchanger 16 (CHX16); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: stem, male gametophyte, hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 17 (TAIR:AT4G23700.1); Has 10345 Blast hits to 10314 proteins in 2156 species: Archae - 371; Bacteria - 8080; Metazoa - 56; Fungi - 195; Plants - 675; Viruses - 0; Other Eukaryotes - 968 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0475eggNOG:KOG1650EMBL:AC007764EMBL:CP002684
EMBL:DQ499021EnsemblPlants:AT1G64170EnsemblPlants:AT1G64170.1entrez:842721
GeneID:842721Genevisible:Q1HDT3GO:GO:0005451GO:GO:0005783
GO:GO:0006813GO:GO:0006885GO:GO:0016021GO:GO:1902600
Gramene:AT1G64170.1hmmpanther:PTHR32468hmmpanther:PTHR32468:SF0HOGENOM:HOG000131548
InParanoid:Q1HDT3InterPro:IPR006153KEGG:ath:AT1G64170OMA:LVILQIC
PaxDb:Q1HDT3Pfam:PF00999Pfam:Q1HDT3PhylomeDB:Q1HDT3
PRIDE:Q1HDT3PRO:PR:Q1HDT3ProteinModelPortal:Q1HDT3Proteomes:UP000006548
RefSeq:NP_176599.2SMR:Q1HDT3STRING:3702.AT1G64170.1TAIR:AT1G64170
tair10-symbols:ATCHX16tair10-symbols:CHX16TMHMM:TMhelixUniGene:At.36040
UniProt:Q1HDT3
Coordinates (TAIR10) chr1:-:23815239..23818293
Molecular Weight (calculated) 88055.80 Da
IEP (calculated) 8.64
GRAVY (calculated) 0.40
Length 811 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTLVNGTIP AMKCPKNVAM MKTTSNGVFD GESPLDFAFP LVILQICLVV AVTRSLAFLL RPMRQPRVVA EIIGGILLGP SALGRITSYK NSIFPARSLT
101: VLDTLANLGL LLFLFLVGLE IDLTSLRRTG KKAISIAAAG MLLPFGMGIV TSFAFPEASS SGDNSKVLPF IIFMGVALSI TAFGVLARIL AELKLLTTDL
201: GRISMNAAAI NDVAAWVLLA LAVSLSGDRN SPLVPLWVLL SGIAFVIACF LIVPRIFKFI SRRCPEGEPI GEMYVCVALC AVLLAGFATD AIGIHAIFGA
301: FVMGVLFPKG HFSDAIVEKI EDLVMGLLLP LYFVMSGLKT DITTIQGVKS WGRLALVIVT ACFGKIVGTV SVALLCKVRL RESVVLGVLM NTKGLVELIV
401: LNIGKDRKVL SDQTFAIMVL MAIFTTFITT PIVLALYKPS ETTQTHSSVS YKNRKHRRKI ENDEEGEKMQ QLKVLVCLQS SKDIDPMMKI MEATRGSNET
501: KERFCVYVMH LTQLSERPSS IRMVQKVRSN GLPFWNKKRE NSSAVTVAFE ASSKLSSVSV RSVTAISPLS TIHEDICSSA DSKCTAFVIL PFHKQWRSLE
601: KEFETVRSEY QGINKRVLEN SPCSVGILVD RGLGDNNSPV ASSNFSLSVN VLFFGGCDDR EALVYGLRMA EHPGVNLTVV VISGPESARF DRLEAQETSL
701: CSLDEQFLAA IKKRANAARF EERTVNSTEE VVEIIRQFYE CDILLVGKSS KGPMVSRLPV MKIECPELGP VGNLIVSNEI STSVSVLVVQ QYTGKGPSVV
801: GSVSVPVVET P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)