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AT4G12480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17786468 (2007): extracellular region plant-type cell wall
  • PMID:17786468 (2007): plasma membrane
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
a putative lipid transfer protein, vernalization-responsive and cold-induced
Computational
Description (TAIR10)
pEARLI 1; FUNCTIONS IN: lipid binding; INVOLVED IN: defense response to fungus, lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT4G12490.1); Has 25729 Blast hits to 6685 proteins in 920 species: Archae - 83; Bacteria - 6798; Metazoa - 2174; Fungi - 817; Plants - 5752; Viruses - 1740; Other Eukaryotes - 8365 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1NAeggNOG:ENOG410YRRTEMBL:AF412111EMBL:AK230253
EMBL:AL049730EMBL:AL161534EMBL:AY133654EMBL:CP002687
EMBL:L43080EnsemblPlants:AT4G12480EnsemblPlants:AT4G12480.1entrez:826860
GeneID:826860Genevisible:Q39176GO:GO:0005576GO:GO:0005783
GO:GO:0009409GO:GO:0009505GO:GO:0009506GO:GO:0009651
GO:GO:0009682GO:GO:0009707GO:GO:0009737GO:GO:0050832
Gramene:AT4G12480.1hmmpanther:PTHR31731HOGENOM:HOG000237797InParanoid:Q39176
InterPro:IPR016140InterPro:IPR027923KEGG:ath:AT4G12480OMA:FTLVSAC
PaxDb:Q39176Pfam:PF14547Pfam:Q39176PhylomeDB:Q39176
PIR:T07640PRO:PR:Q39176ProteinModelPortal:Q39176Proteomes:UP000006548
RefSeq:NP_192985.1SMART:SM00499SMR:Q39176STRING:3702.AT4G12480.1
SUPFAM:SSF47699TAIR:AT4G12480tair10-symbols:pEARLI 1TMHMM:TMhelix
UniGene:At.3226UniProt:Q39176
Coordinates (TAIR10) chr4:-:7406371..7406877
Molecular Weight (calculated) 17309.30 Da
IEP (calculated) 9.12
GRAVY (calculated) 0.24
Length 168 amino acids
Sequence (TAIR10)
(BLAST)
001: MASKNSASIA LFFALNIIFF TLTAATDCGC NPSPKHKPVP SPKPKPVPSP KPKPVPSPSV PSPSVPSPNP RPVTPPRTPG SSGNCPIDAL RLGVCANVLS
101: SLLNIQLGQP SAQPCCSLIQ GLVDLDAAIC LCTALRANVL GINLNVPISL SVLLNVCNRK VPSGFQCA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)