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AT4G12500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; EXPRESSED IN: hypocotyl, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT4G12490.1); Has 10886 Blast hits to 4309 proteins in 594 species: Archae - 53; Bacteria - 1827; Metazoa - 1251; Fungi - 647; Plants - 4075; Viruses - 997; Other Eukaryotes - 2036 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1NAeggNOG:ENOG410YRRTEMBL:AL049730EMBL:AL161534
EMBL:BT010818EMBL:BT015101EMBL:CP002687EnsemblPlants:AT4G12500
EnsemblPlants:AT4G12500.1entrez:826862GeneID:826862Genevisible:Q9SU33
GO:GO:0005576GO:GO:0005618Gramene:AT4G12500.1hmmpanther:PTHR31731
HOGENOM:HOG000237797InParanoid:Q9SU33InterPro:IPR016140InterPro:IPR027923
KEGG:ath:AT4G12500OMA:TVATDCKPaxDb:Q9SU33Pfam:PF14547
Pfam:Q9SU33PIR:T07642PRO:PR:Q9SU33ProteinModelPortal:Q9SU33
Proteomes:UP000006548RefSeq:NP_192987.1SMART:SM00499SMR:Q9SU33
STRING:3702.AT4G12500.1SUPFAM:SSF47699TAIR:AT4G12500TMHMM:TMhelix
UniGene:At.33470UniGene:At.48850UniProt:Q9SU33
Coordinates (TAIR10) chr4:-:7414369..7414902
Molecular Weight (calculated) 18355.40 Da
IEP (calculated) 8.58
GRAVY (calculated) 0.25
Length 177 amino acids
Sequence (TAIR10)
(BLAST)
001: MASKNSTSLA LFFALNILFF TLTTATDCRC NLSPKPRTVP SPKVPSPKYP SPSIPSPSVP TPSVPTPSVP TPSVPSPNPT PVTPPRTPGS SGNCPIDALR
101: LGVCANVLSG LLNVQLGQPS AQPCCSLIQG LVDLDAAICL CTALRANVLG INLNVPISLS VLLNVCNRRL PSDFQCA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)