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AT4G22470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, hypocotyl, sepal, stamen; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT4G22485.1); Has 219939 Blast hits to 80042 proteins in 2746 species: Archae - 655; Bacteria - 50351; Metazoa - 79801; Fungi - 26960; Plants - 28532; Viruses - 6737; Other Eukaryotes - 26903 (source: NCBI BLink).
Protein Annotations
EMBL:CP002687EnsemblPlants:AT4G22470EnsemblPlants:AT4G22470.1entrez:828342
GeneID:828342GO:GO:0008233Gramene:AT4G22470.1InParanoid:F4JLV4
InterPro:IPR016140InterPro:IPR027923KEGG:ath:AT4G22470OMA:DTELKIC
PaxDb:F4JLV4Pfam:PF14547PRIDE:F4JLV4ProteinModelPortal:F4JLV4
Proteomes:UP000006548RefSeq:NP_193978.2STRING:3702.AT4G22470.1SUPFAM:SSF47699
TAIR:AT4G22470UniGene:At.2495UniProt:F4JLV4
Coordinates (TAIR10) chr4:-:11840316..11841443
Molecular Weight (calculated) 38791.60 Da
IEP (calculated) 8.29
GRAVY (calculated) -0.03
Length 375 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTTIILFL SFSIIPLLTI VRADNHSVYC PPPPPCICIC NPGPPPPQPD PQPPTPPTFQ PAPPANDQPP PPPQSTSPPP VATTPPALPP KPLPPPLSPP
101: QTTPPPPPAI TPPPPPAITP PLSPPPPAIT PPPPLATTPP ALPPKPLPPP LSPPQTTPPP PPAITPPLSP PLVGICSKND TELKICAGIL AISDGLLTTG
201: RAEPCCSIIR NVSDLDAVTC FCKSVGAPRF SLSPNFGIFF KVCGRRIPQG FSCPGPSPTI SPPPLPPQTL KPPPPQTTPP PPPAITPPLS PPLVGICSKN
301: DTELKICAGI LAISDGLLTT GRAEPCCSIV RNVSDLDAVT CFCKSVGARR FSLSPNFGIF FKVCGRRIPQ GFSCP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)