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AT2G17740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G44370.1); Has 1973 Blast hits to 753 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 1961; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
EMBL:AK175184EMBL:AK175399EMBL:AK176583EMBL:AK176759
EMBL:BT010413EMBL:CP002685EnsemblPlants:AT2G17740EnsemblPlants:AT2G17740.1
entrez:816283GeneID:816283GO:GO:0047134Gramene:AT2G17740.1
hmmpanther:PTHR13871hmmpanther:PTHR13871:SF42HOGENOM:HOG000093099InterPro:IPR004146
KEGG:ath:AT2G17740OMA:REMEQMQPfam:PF03107Pfam:PF07649
PhylomeDB:Q6NQN8Proteomes:UP000006548RefSeq:NP_179365.1SMR:Q6NQN8
STRING:3702.AT2G17740.1SUPFAM:SSF57889TAIR:AT2G17740UniGene:At.40105
UniProt:Q6NQN8
Coordinates (TAIR10) chr2:-:7707082..7707828
Molecular Weight (calculated) 27955.30 Da
IEP (calculated) 7.37
GRAVY (calculated) -0.63
Length 248 amino acids
Sequence (TAIR10)
(BLAST)
001: MASRPSVRHP SHNHPLRGHK AQVEDEIICS GCDLDLLGAY FKCTKSECDY FLHKSCFDLP REIRHKSHPD HPLILLYSPQ NNNSTYTCDA CGEYGSGFTY
101: NCSICQYDVH VGCVSVPETM KHDEHVHPLA LIYKAPCPKD HIFTCDVCDE TMPHNLWLYY CQKCDYGAHL HSCVAEEEEK SKKGGRGRGG EGGSGGNGVN
201: RGRSSANSEL AAMLKAQREM EQMQIALHLE MQRAKIDKKS RKHMLKMI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)