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AT3G18250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.535
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21443605 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Putative membrane lipoprotein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Putative membrane lipoprotein; Has 25 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 1; Plants - 18; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX0ReggNOG:ENOG41104EKEMBL:AY600575EMBL:AY924771
EMBL:CP002686EnsemblPlants:AT3G18250EnsemblPlants:AT3G18250.1entrez:821353
GeneID:821353GO:GO:0005783GO:GO:0016021Gramene:AT3G18250.1
hmmpanther:PTHR37199hmmpanther:PTHR37199:SF1KEGG:ath:AT3G18250OMA:THFDASY
Pfscan:PS51257Proteomes:UP000006548RefSeq:NP_188453.1STRING:3702.AT3G18250.1
TAIR:AT3G18250TMHMM:TMhelixUniGene:At.49389UniGene:At.6712
UniProt:Q6E248
Coordinates (TAIR10) chr3:-:6258177..6258407
Molecular Weight (calculated) 7465.92 Da
IEP (calculated) 5.36
GRAVY (calculated) 0.60
Length 76 amino acids
Sequence (TAIR10)
(BLAST)
1: MARHLLEDVM SMATTTTHFD ASYLFHVVFL AVIGCCILSA LLFSCADGVS DNRATSGTST GGGGCGGAGC GGGCGG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)