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AT1G76930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : extensin 4
Curator
Summary (TAIR10)
Encodes an Arabidopsis extensin gene that belongs to cell-wall hydroxyproline-rich glycoproteins. The cross-link of extensins enforces cell wall strength. Transgenic plants overexpressing this gene show an increase in stem thickness.
Computational
Description (TAIR10)
extensin 4 (EXT4); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: response to jasmonic acid stimulus, response to wounding, response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: extensin 3 (TAIR:AT1G21310.1); Has 70571 Blast hits to 25422 proteins in 1351 species: Archae - 162; Bacteria - 9676; Metazoa - 26960; Fungi - 9190; Plants - 12813; Viruses - 2187; Other Eukaryotes - 9583 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G76930EnsemblPlants:AT1G76930.1entrez:844028tair10-symbols:ATEXT1
tair10-symbols:ATEXT4tair10-symbols:EXT1tair10-symbols:EXT4tair10-symbols:ORG5
Coordinates (TAIR10) chr1:-:28895449..28896853
Molecular Weight (calculated) 32939.60 Da
IEP (calculated) 10.15
GRAVY (calculated) -0.58
Length 293 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAPMASFLV LAFSLAFVSQ TTANYFYSSP PPPVKHYSPP PVYKSPPPPV KHYSPPPVYK SPPPPVKHYS PPPVYKSPPP PVKYYSPPPV YKSPPPPVYK
101: SPPPPVKHYS PPPVYKSPPP PVKHYSPPPV YKSPPPPVKH YSPPPVYKSP PPPVKHYSPP PSYTTLHHHR FTTHLLQSYT TLHHHRFTTH LLQLYTTPHH
201: HPRSTTNTNL LLLRTPLLTS TPTLPLQITT SSSLLDYLIV SNGVDDDTQE NKESFGDIIK DTRSLTGELK RIHMSKEKVS HFNVFSLFIN TLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)