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AT1G21310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : extensin 3
Curator
Summary (TAIR10)
Encodes extensin 3.
Computational
Description (TAIR10)
extensin 3 (EXT3); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: extensin 4 (TAIR:AT1G76930.1); Has 148545 Blast hits to 27416 proteins in 1232 species: Archae - 272; Bacteria - 19294; Metazoa - 56539; Fungi - 24663; Plants - 25187; Viruses - 4465; Other Eukaryotes - 18125 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX3VeggNOG:ENOG41104BKEMBL:AB031819EMBL:AB031821
EMBL:AC036104EMBL:CP002684EnsemblPlants:AT1G21310EnsemblPlants:AT1G21310.1
entrez:838728GeneID:838728Genevisible:Q9FS16GO:GO:0005199
GO:GO:0005576GO:GO:0009530GO:GO:0009664Gramene:AT1G21310.1
HOGENOM:HOG000176799InParanoid:Q9FS16InterPro:IPR006706KEGG:ath:AT1G21310
OMA:PLVKPYHPaxDb:Q9FS16Pfam:PF04554Pfam:Q9FS16
PIR:B86346PRIDE:Q9FS16PRO:PR:Q9FS16ProteinModelPortal:Q9FS16
Proteomes:UP000006548RefSeq:NP_173553.1STRING:3702.AT1G21310.1TAIR:AT1G21310
tair10-symbols:ATEXT3tair10-symbols:EXT3tair10-symbols:RSHUniGene:At.24682
UniGene:At.33385UniGene:At.67072UniGene:At.71005UniProt:Q9FS16
Coordinates (TAIR10) chr1:-:7453693..7454988
Molecular Weight (calculated) 49178.30 Da
IEP (calculated) 10.32
GRAVY (calculated) -1.20
Length 431 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSPMASLVA TLLVLTISLT FVSQSTANYF YSSPPPPVKH YTPPVKHYSP PPVYHSPPPP KKHYEYKSPP PPVKHYSPPP VYHSPPPPKK HYVYKSPPPP
101: VKHYSPPPVY HSPPPPKKHY VYKSPPPPVK HYSPPPVYHS PPPPKKHYVY KSPPPPVKHY SPPPVYHSPP PPKKHYVYKS PPPPVKHYSP PPVYHSPPPP
201: KKHYVYKSPP PPVKHYSPPP VYHSPPPPKK HYVYKSPPPP VKHYSPPPVY HSPPPPKKHY VYKSPPPPVK HYSPPPVYHS PPPPKKHYVY KSPPPPVKHY
301: SPPPVYHSPP PPKKHYVYKS PPPPVKHYSP PPVYHSPPPP KKHYVYKSPP PPVKHYSPPP VYHSPPPPKK HYVYKSPPPP VKHYSPPPVY HSPPPPKEKY
401: VYKSPPPPPV HHYSPPHHPY LYKSPPPPYH Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)