AT3G24480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT4G13340.1); Has 128997 Blast hits to 49133 proteins in 1941 species: Archae - 161; Bacteria - 13645; Metazoa - 31793; Fungi - 8450; Plants - 59695; Viruses - 2612; Other Eukaryotes - 12641 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:8901154..8902638 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54705.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.93 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 494 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKNNTTQSLL LLLLFFFFFF EISHSLSISS NAPLSDTEVR FIQRRQLLYY RDEFGDRGEN VTVDPSLIFE NPRLRSAYIA LQAWKQAILS DPNNITVNWI 101: GSNVCNYTGV FCSKALDNRK IRTVAGIDLN HADIAGYLPE ELGLLTDLAL FHVNSNRFCG TVPHKFKQLK LLFELDLSNN RFAGKFPTVV LHLPSLKFLD 201: LRFNEFEGTV PKELFSKNLD AIFINHNRFR FELPENFGDS PVSVIVLANN HFHGCIPTSL VEMKNLNEII FMNNGLNSCL PADIGRLKNV TVFDVSFNEL 301: VGPLPESVGG MVEVEQLNVA HNLLSGKIPA SICQLPKLEN FTYSYNFFTG EAPVCLRLSE FDDRRNCLPG RPAQRSSRQC SAFLSRPSVD CGSFGCGRSV 401: VKPSPPIVAL PPPPPPSPPL PPPVYSPPPS PPVFSPPPSP PVYSPPPPPS IHYSSPPPPP VHHSSPPPPS PEFEGPLPPV IGVSYASPPP PPFY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)