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AT4G13340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:24393051 (2015): extracellular region
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:16729891 (2006): extracellular region
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G24480.1); Has 637879 Blast hits to 129296 proteins in 3596 species: Archae - 1468; Bacteria - 134638; Metazoa - 215120; Fungi - 74599; Plants - 120849; Viruses - 14592; Other Eukaryotes - 76613 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IMQZeggNOG:ENOG410Y973EMBL:AL049608EMBL:AL161536
EMBL:CP002687EnsemblPlants:AT4G13340EnsemblPlants:AT4G13340.1entrez:826964
Gene3D:3.80.10.10GeneID:826964Genevisible:Q9T0K5GO:GO:0005199
GO:GO:0005576GO:GO:0005618GO:GO:0009505GO:GO:0009506
GO:GO:0071555Gramene:AT4G13340.1hmmpanther:PTHR32093hmmpanther:PTHR32093:SF23
HOGENOM:HOG000239260InParanoid:Q9T0K5InterPro:IPR013210InterPro:IPR032675
KEGG:ath:AT4G13340OMA:VHYSSPPPaxDb:Q9T0K5Pfam:PF08263
Pfam:Q9T0K5PhylomeDB:Q9T0K5PIR:T06291PRIDE:Q9T0K5
PRO:PR:Q9T0K5ProteinModelPortal:Q9T0K5Proteomes:UP000006548RefSeq:NP_193070.1
SMR:Q9T0K5STRING:3702.AT4G13340.1SUPFAM:SSF52058TAIR:AT4G13340
TMHMM:TMhelixUniGene:At.48854UniProt:Q9T0K5
Coordinates (TAIR10) chr4:+:7758610..7760892
Molecular Weight (calculated) 82250.40 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.45
Length 760 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKTIQILLF FFFLINLTNA LSISSDGGVL SDNEVRHIQR RQLLEFAERS VKITVDPSLN FENPRLRNAY IALQAWKQAI LSDPNNFTSN WIGSNVCNYT
101: GVFCSPALDN RKIRTVAGID LNHADIAGYL PEELGLLSDL ALFHVNSNRF CGTVPHRFNR LKLLFELDLS NNRFAGKFPT VVLQLPSLKF LDLRFNEFEG
201: TVPKELFSKD LDAIFINHNR FRFELPENFG DSPVSVIVLA NNRFHGCVPS SLVEMKNLNE IIFMNNGLNS CLPSDIGRLK NVTVFDVSFN ELVGPLPESV
301: GEMVSVEQLN VAHNMLSGKI PASICQLPKL ENFTYSYNFF TGEAPVCLRL PEFDDRRNCL PGRPAQRSPG QCKAFLSRPP VNCGSFSCGR SVSPRPPVVT
401: PLPPPSLPSP PPPAPIFSTP PTLTSPPPPS PPPPVYSPPP PPPPPPPVYS PPPPPPPPPP PPVYSPPPPP PPPPPPPPVY SPPPPSPPPP PPPVYSPPPP
501: PPPPPPPPVY SPPPPPVYSS PPPPPSPAPT PVYCTRPPPP PPHSPPPPQF SPPPPEPYYY SSPPPPHSSP PPHSPPPPHS PPPPIYPYLS PPPPPTPVSS
601: PPPTPVYSPP PPPPCIEPPP PPPCIEYSPP PPPPVVHYSS PPPPPVYYSS PPPPPVYYSS PPPPPPVHYS SPPPPEVHYH SPPPSPVHYS SPPPPPSAPC
701: EESPPPAPVV HHSPPPPMVH HSPPPPVIHQ SPPPPSPEYE GPLPPVIGVS YASPPPPPFY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)