AT2G43150.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Proline-rich extensin-like family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); Has 134937 Blast hits to 39196 proteins in 1663 species: Archae - 308; Bacteria - 21148; Metazoa - 50725; Fungi - 18898; Plants - 23643; Viruses - 3727; Other Eukaryotes - 16488 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:17945893..17946531 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 23429.90 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.64 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||||||
| Length | 212 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATPAWSHAK AQWVVAMLAL LVGSAMATEP YYYSSPPPPY EYKSPPPPVK SPPPPYEYKS PPPPVKSPPP PYYYHSPPPP VKSPPPPYVY SSPPPPVKSP 101: PPPYYYHSPP PPVKSPPPPY YYHSPPPPVK SPPPPYYYHS PPPPVKSPPP PYYYHSPPPP VKSPPPPYYY HSPPPPVKSP PPPYLYSSPP PPVKSPPPPV 201: YIYASPPPPT HY |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)