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AT3G22800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G24480.1); Has 229273 Blast hits to 72952 proteins in 2610 species: Archae - 422; Bacteria - 37303; Metazoa - 68145; Fungi - 17365; Plants - 71911; Viruses - 5341; Other Eukaryotes - 28786 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IMQZeggNOG:ENOG410Y973EMBL:AB022223EMBL:BT053757
EMBL:CP002686EnsemblPlants:AT3G22800EnsemblPlants:AT3G22800.1entrez:821851
Gene3D:3.80.10.10GeneID:821851Genevisible:Q9LUI1GO:GO:0005199
GO:GO:0005576GO:GO:0005618GO:GO:0071555Gramene:AT3G22800.1
hmmpanther:PTHR32093HOGENOM:HOG000239260InParanoid:Q9LUI1InterPro:IPR001611
InterPro:IPR013210InterPro:IPR032675KEGG:ath:AT3G22800OMA:PPYVYPP
PaxDb:Q9LUI1Pfam:PF08263Pfam:PF13855Pfam:Q9LUI1
PhylomeDB:Q9LUI1PRIDE:Q9LUI1PRO:PR:Q9LUI1ProteinModelPortal:Q9LUI1
Proteomes:UP000006548RefSeq:NP_188919.1SMR:Q9LUI1STRING:3702.AT3G22800.1
SUPFAM:SSF52058TAIR:AT3G22800TMHMM:TMhelixUniGene:At.22521
UniProt:Q9LUI1
Coordinates (TAIR10) chr3:-:8063063..8064475
Molecular Weight (calculated) 52337.80 Da
IEP (calculated) 6.22
GRAVY (calculated) -0.22
Length 470 amino acids
Sequence (TAIR10)
(BLAST)
001: MREDTFFFQW WFLVSGLSFI FLLPQAFTYH TPPINPCFAH PFLPPITNPR LLKAFTALQA WKFTITSDPN GFTSNWCGPN VCNYTGVFCA PALDNPYVLT
101: VAGIDLNHAN IAGYLPLELG LLTDLALFHI NSNRFQGQLP KTLKCLHLLH ELDVSNNKLS GEFPSVIFSL PSLKFLDIRF NEFQGDVPSQ LFDLNLDALF
201: INDNKFQFRL PRNIGNSPVS VLVLANNDLQ GSCVPPSFYK MGKTLHEIII TNSQLTGCLN REIGLLNQLT VFDVSYNNLV GSLPETIGDM KSLEQLNIAH
301: NKFSGYIPES ICRLPRLENF TYSYNFFSGE PPACLRLQEF DDRRNCLPSR PMQRSLAECK SFSSYPIDCA SFGCSPPSPP PPPPPPPPPP PPPPPPPPPP
401: PPPPPPPYVY PSPPPPPPSP PPYVYPPPPP PYVYPPPPSP PYVYPPPPPS PQPYMYPSPP CNDLPTPVHY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)