AT1G26240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Proline-rich extensin-like family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT4G08370.1); Has 364257 Blast hits to 37887 proteins in 1520 species: Archae - 1099; Bacteria - 63371; Metazoa - 128573; Fungi - 46566; Plants - 64812; Viruses - 9875; Other Eukaryotes - 49961 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9078140..9079576 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 52896.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.54 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.88 | ||||||||||||||||||||||||
| Length | 478 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANPNGWPSL LMLVIALYSV SAHTSAQYTY SPPSPPSYVY KPPTHIYSSP PPPPYVYSSP PPPPYIYKSP PPPPYVYSSP PPPPYIYKSP PPPPYVYSSP 101: PPPPYIYKSP PPPPYVYSSP PPPPYVYKSP PPPPYVYNSP PPPPYVYKSP PPPPYVYSSP PPPPYVYKSP PPPPYVYSSP PPPPYVYKSP PPPPYVYSSP 201: PPPPYVYKSP PPPPYVYSSP PPPPYVYKSP PPPPYVYSSP PPPPYVYKSP PPPPYVYSSP PPPPYVYKSP PPPPYVYSSP PPPPYVYKSP PPPPYVYSSP 301: PPPPYVYKSP PPPPYVYSSP PPPPYVYKSP PPPPYVYNSP PPPPYVYKSP PPPPYVYSSP PPSPYVYKSP PPPPYVYSSP PPPPYVYKSP PPPPYVYSSP 401: PPPPYVYKSP PPPPYVYSSP PPPPYVYKSP PPPPYVYSSP PPPPYVYKSP SPPPYVYKSP PPPPSYSYSY SSPPPPIY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)