AT3G56590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G10810.1); Has 25302 Blast hits to 15852 proteins in 1026 species: Archae - 46; Bacteria - 3146; Metazoa - 8883; Fungi - 4295; Plants - 4804; Viruses - 810; Other Eukaryotes - 3318 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20965105..20967675 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 52078.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.96 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||
| Length | 477 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKNTVEEQN LPVSDGAASA RNNGGGGIST CCCCDWISSY FSLRCVLILA FSAAVFLSAL FWLPPFLGFA DPGDLDLDPR FKDHRIVASF DVGKPISFME 101: DNLMQLENDI TDEISFPMTK VVVLALERLG DLNRTMVIFA IDPEKENSKI PAEIESLIKA AFETLVQKQL SFRLTESLFG EPFFFEVLKF PGGITVIPPQ 201: PIFPLQKAQL LFNFTLNFSI YQIQSNFEEL ASQLKKGINL ASYENLYITL SNSRGSTVAP PTIVHSSVLL TFGSSSRLKQ LAQTITSSHS KNLGLNHTVF 301: GKVKQVRLSS ILPHSPATSS TPSPSPQPET HQYPHHHPHH HHHHHELAPE PSLSPPTKGF APASAPTKHS PLPPRNPPCP YEQRRPKGNS ALNHHTAPPT 401: PAPHRSQPHP PAPNPAPPRH HAIPVSSPLP HVVFAHIPPP SKSSPESEPT GEKSPSPAPT PCKSSSLTQF SRSASLN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)