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AT3G10810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc finger (C3HC4-type RING finger) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc finger (C3HC4-type RING finger) family protein; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G56590.1); Has 18036 Blast hits to 9011 proteins in 812 species: Archae - 58; Bacteria - 3529; Metazoa - 8497; Fungi - 1587; Plants - 1132; Viruses - 68; Other Eukaryotes - 3165 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:BT030460EMBL:CP002686
EnsemblPlants:AT3G10810EnsemblPlants:AT3G10810.1entrez:820250GeneID:820250
GO:GO:0016021Gramene:AT3G10810.1hmmpanther:PTHR33826hmmpanther:PTHR33826:SF2
KEGG:ath:AT3G10810OMA:REPHANEProteomes:UP000006548RefSeq:NP_187692.2
TAIR:AT3G10810TMHMM:TMhelixUniGene:At.48646UniProt:A4VCL9
Coordinates (TAIR10) chr3:-:3381848..3384227
Molecular Weight (calculated) 54637.30 Da
IEP (calculated) 9.41
GRAVY (calculated) -0.22
Length 496 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKTEDDVSL RVAGGEATGD STVRNARCGC CKWISSFVGF KCLFVLLLSV ALFLSALFLL LPFPMDREDS NLDPRFRGHA IVASFSINRS ASFLNENTLQ
101: LQNDIFQEMS YISIKVTILA VEPSDELNIT KVVFGIDPDT GYREILPLSL SSIKEMFESV LINQSTLQLT KSLFGETFLF EVLKFPGGIT VIPPQSAFPL
201: QKFKIVFNFT LNYSIHQIQI NFNTLASQLK NGLNLAPYEN LYVSLSNSEG STVSPPTTVH SSVLLRVGTS NSSPRLKQLT DTITGSRSKN LGLNNTIFGK
301: VKQVRLSSFL PNSSDSSTKS PSPSPSPHSK HHHHHHHHHH HHHHHHHNHH HHHHHNLSPK MAPEVSPVAS PAPHRSRKRA PSAPPPCNPG NRVHFKEKRV
401: QFSSTPAPAP SAGAPHHQLH SPAPISAAKS HIVPISAPLP HVVFAHAAQP PITEPREPHA NEVAHPQPQS SSSAIEVLPA MPWIVLLMLI VAWLHE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)