suba logo
AT1G62440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : leucine-rich repeat/extensin 2
Curator
Summary (TAIR10)
encodes a paralog of LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) which acts synergistically with LRX1 in root hair cell morphogenesis.
Computational
Description (TAIR10)
leucine-rich repeat/extensin 2 (LRX2); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat/extensin 1 (TAIR:AT1G12040.1); Has 394418 Blast hits to 112735 proteins in 3055 species: Archae - 811; Bacteria - 65245; Metazoa - 131456; Fungi - 52175; Plants - 95400; Viruses - 7676; Other Eukaryotes - 41655 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHYJeggNOG:ENOG411157WEMBL:AC003113EMBL:AC005698
EMBL:CP002684EnsemblPlants:AT1G62440EnsemblPlants:AT1G62440.1entrez:842542
Gene3D:3.80.10.10GeneID:842542Genevisible:O48809GO:GO:0005576
GO:GO:0005618GO:GO:0007275GO:GO:0071555Gramene:AT1G62440.1
hmmpanther:PTHR32093hmmpanther:PTHR32093:SF40HOGENOM:HOG000215018InParanoid:O48809
InterPro:IPR001611InterPro:IPR013210InterPro:IPR032675KEGG:ath:AT1G62440
PaxDb:O48809Pfam:O48809Pfam:PF08263Pfam:PF13855
PIR:T01456PRIDE:O48809PRO:PR:O48809ProteinModelPortal:O48809
Proteomes:UP000006548RefSeq:NP_176434.1SMR:O48809STRING:3702.AT1G62440.1
SUPFAM:SSF52058TAIR:AT1G62440tair10-symbols:LRX2UniGene:At.52324
UniProt:O48809
Coordinates (TAIR10) chr1:+:23111818..23115293
Molecular Weight (calculated) 89808.70 Da
IEP (calculated) 4.77
GRAVY (calculated) -0.52
Length 826 amino acids
Sequence (TAIR10)
(BLAST)
001: MESSDDCFIQ LEVSVRLGVN DLLSFENYRT SFPWDSYSGL DGFFHLGAVD DEGNLTEIGQ LMNLEIRGDD DDDDISDDNI KVDPSLKFEN PSLRQAYIAL
101: QSWKQAIFSD PFNFTANWNG SDVCSYNGIF CAPSPSSPKT RVVAGIDLNH ADMAGYLPRE LGLLTDLALF HLNSNRFCGE VPLTFKHMKL LFELDLSNNR
201: FVGKFPNVVL SLPSLKFLDL RYNEFEGSIP SKLFDKELDA IFLNHNRFMF GIPENMGNSP VSALVLADND LGGCIPGSIG LMGKTLNEII LSNDNLTGCL
301: PPQIGNLKNV TVFDISFNRL SGPLPSSIGN MKSLEQLNVA NNRFTGVIPS SICQLSNLEN FTYSSNFFTG DAPRCVALLG DNVVVNGSMN CIDGKEDQRS
401: SKECSSPASR SVDCSKFGCN NFFSPPPPSF KMSPTVRVLP PPPPSSKMSP TFRATPPPPS SKMSPSFRAT PPPPSSKMSP SFRATPPPPS SKMSPSVKAY
501: PPPPPPPEYE PSPPPPSSEM SPSVRAYPPP PPLSPPPPSP PPPYIYSSPP PPSPSPPPPY IYSSPPPVVN CPPTTQSPPP PKYEQTPSPR EYYPSPSPPY
601: YQYTSSPPPP TYYATQSPPP PPPPTYYAVQ SPPPPPPVYY PPVTASPPPP PVYYTPVIQS PPPPPVYYSP VTQSPPPPPP VYYPPVTQSP PPSPVYYPPV
701: TQSPPPPPVY YLPVTQSPPP PSPVYYPPVA KSPPPPSPVY YPPVTQSPPP PSTPVEYHPP ASPNQSPPPE YQSPPPKGCN DSPSNDHHYQ TPTPPSLPPP
801: YYEDTPLPPI RGVSYASPPP PSIPYY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)