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AT4G30290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : xyloglucan endotransglucosylase/hydrolase 19
Curator
Summary (TAIR10)
Encodes a xyloglucan endotransglucosylase/hydrolase with only only the endotransglucosylase (XET; EC 2.4.1.207) activity towards xyloglucan and non-detectable endohydrolytic (XEH; EC 3.2.1.151) activity. Expressed throughout both the main and the lateral root, with intensive expression at the dividing and elongating regions. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow.
Computational
Description (TAIR10)
xyloglucan endotransglucosylase/hydrolase 19 (XTH19); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity; INVOLVED IN: xyloglucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 18 (TAIR:AT4G30280.1); Has 2243 Blast hits to 2221 proteins in 314 species: Archae - 0; Bacteria - 296; Metazoa - 0; Fungi - 459; Plants - 1387; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G30290-MONOMERBRENDA:2.4.1.207CAZy:GH16EC:2.4.1.207
eggNOG:COG2273eggNOG:ENOG410IHDJEMBL:AL161576EMBL:AY050373
EMBL:AY143887EMBL:CP002687EnsemblPlants:AT4G30290EnsemblPlants:AT4G30290.1
entrez:829152Gene3D:2.60.120.200GeneID:829152Genevisible:Q9M0D1
GO:GO:0004553GO:GO:0005618GO:GO:0008283GO:GO:0010411
GO:GO:0016762GO:GO:0042546GO:GO:0048046GO:GO:0071365
GO:GO:0071555GO:GO:0080039Gramene:AT4G30290.1hmmpanther:PTHR31062
hmmpanther:PTHR31062:SF20HOGENOM:HOG000236368InParanoid:Q9M0D1InterPro:IPR000757
InterPro:IPR008263InterPro:IPR008264InterPro:IPR010713InterPro:IPR013320
InterPro:IPR016455KEGG:ath:AT4G30290KO:K08235OMA:PANSQWF
PaxDb:Q9M0D1Pfam:PF00722Pfam:PF06955Pfam:Q9M0D1
Pfscan:PS51762PhylomeDB:Q9M0D1PIR:B85354PIRSF:PIRSF005604
PRINTS:PR00737PRO:PR:Q9M0D1PROSITE:PS01034PROSITE:PS51762
ProteinModelPortal:Q9M0D1Proteomes:UP000006548RefSeq:NP_194758.1scanprosite:PS01034
SMR:Q9M0D1STRING:3702.AT4G30290.1SUPFAM:SSF49899TAIR:AT4G30290
tair10-symbols:ATXTH19tair10-symbols:XTH19UniGene:At.23039UniProt:Q9M0D1
Coordinates (TAIR10) chr4:-:14828954..14829965
Molecular Weight (calculated) 31564.30 Da
IEP (calculated) 9.04
GRAVY (calculated) -0.50
Length 277 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSFTFLILF LFAAQSISVY AGSFHKDVKI HWGDGRGKIH DNQGKLLSLS LDKSSGSGFQ SNQEFLYGKA EVQMKLVPGN SAGTVTTFYL KSPGTTWDEI
101: DFEFLGNISG HPYTLHTNVY TKGSGDKEQQ FHLWFDPTAN FHTYCITWNP QRIIFTVDGI PIREFMNAES RGVPFPTKQP MRLYASLWEA EHWATRGGLE
201: KTDWSKAPFT AYYRNYNVEG CVWVNGKSVC PANSQWFTQK LDSNGQTRMK GVQSKYMVYN YCSDKKRFPR GVPPECS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)