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AT4G30280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22430844 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : xyloglucan endotransglucosylase/hydrolase 18
Curator
Summary (TAIR10)
Encodes a xyloglucan endotransglucosylase/hydrolase with only only the endotransglucosylase (XET; EC 2.4.1.207) activity towards xyloglucan and non-detectable endohydrolytic (XEH; EC 3.2.1.151) activity. Expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.
Computational
Description (TAIR10)
xyloglucan endotransglucosylase/hydrolase 18 (XTH18); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity; INVOLVED IN: xyloglucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 17 (TAIR:AT1G65310.1); Has 2232 Blast hits to 2210 proteins in 310 species: Archae - 0; Bacteria - 291; Metazoa - 0; Fungi - 455; Plants - 1387; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G30280-MONOMERBRENDA:2.4.1.207CAZy:GH16EC:2.4.1.207
eggNOG:COG2273eggNOG:ENOG410IHDJEMBL:AF083779EMBL:AF419549
EMBL:AL161576EMBL:AY085267EMBL:AY097337EMBL:CP002687
EnsemblPlants:AT4G30280EnsemblPlants:AT4G30280.1entrez:829151Gene3D:2.60.120.200
GeneID:829151Genevisible:Q9M0D2GO:GO:0004553GO:GO:0005618
GO:GO:0005794GO:GO:0010411GO:GO:0016762GO:GO:0042546
GO:GO:0048046GO:GO:0071555GO:GO:0080039Gramene:AT4G30280.1
hmmpanther:PTHR31062hmmpanther:PTHR31062:SF20HOGENOM:HOG000236368InParanoid:Q9M0D2
InterPro:IPR000757InterPro:IPR008263InterPro:IPR008264InterPro:IPR010713
InterPro:IPR013320InterPro:IPR016455KEGG:ath:AT4G30280KO:K08235
OMA:NLSGHPYPaxDb:Q9M0D2Pfam:PF00722Pfam:PF06955
Pfam:Q9M0D2Pfscan:PS51762PhylomeDB:Q9M0D2PIR:A85354
PIRSF:PIRSF005604PRIDE:Q9M0D2PRINTS:PR00737PRO:PR:Q9M0D2
PROSITE:PS01034PROSITE:PS51762ProteinModelPortal:Q9M0D2Proteomes:UP000006548
RefSeq:NP_194757.1scanprosite:PS01034SMR:Q9M0D2STRING:3702.AT4G30280.1
SUPFAM:SSF49899TAIR:AT4G30280tair10-symbols:ATXTH18tair10-symbols:XTH18
TMHMM:TMhelixUniGene:At.27397UniProt:Q9M0D2
Coordinates (TAIR10) chr4:-:14825958..14826998
Molecular Weight (calculated) 32073.80 Da
IEP (calculated) 8.74
GRAVY (calculated) -0.48
Length 282 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLSCGTSFA FLIMFLFAAQ SMHVYAGSFH KDVQIHWGDG RGKVRDRDGK LLSLSLDKSS GSGFQSNQEF LYGKAEVQMK LVPGNSAGTV TTFYLKSPGT
101: TWDEIDFEFL GNLSGHPYTL HTNVYTKGSG DKEQQFHLWF DPTVNFHTYC ITWNPQRIIF TVDGIPIREF KNSESIGVPF PTKQPMRLYA SLWEAEHWAT
201: RGGLEKTDWS KAPFTAFYRN YNVEGCVWAN GKSSCPANSS WFTQQLDSNG QTRMKGVQSK YMVYNYCNDK RRFPRGVPVE CS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)