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AT2G22470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : arabinogalactan protein 2
Curator
Summary (TAIR10)
Encodes arabinogalactan-protein (AGP2).
Computational
Description (TAIR10)
arabinogalactan protein 2 (AGP2); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 3 (TAIR:AT4G40090.1); Has 40526 Blast hits to 18637 proteins in 1352 species: Archae - 307; Bacteria - 12509; Metazoa - 8294; Fungi - 3358; Plants - 6174; Viruses - 1616; Other Eukaryotes - 8268 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX13eggNOG:ENOG41104E8EMBL:AC006592EMBL:AF082299
EMBL:AY062726EMBL:AY093356EMBL:CP002685EnsemblPlants:AT2G22470
EnsemblPlants:AT2G22470.1entrez:816779GeneID:816779Genevisible:Q9SJY7
GO:GO:0005737GO:GO:0005886GO:GO:0031225Gramene:AT2G22470.1
HOGENOM:HOG000033857InParanoid:Q9SJY7KEGG:ath:AT2G22470OMA:VNEPTPA
PaxDb:Q9SJY7Pfam:Q9SJY7Pfscan:PS51257PIR:A84613
PRO:PR:Q9SJY7ProteinModelPortal:Q9SJY7Proteomes:UP000006548RefSeq:NP_565537.1
STRING:3702.AT2G22470.1TAIR:AT2G22470tair10-symbols:AGP2tair10-symbols:ATAGP2
TMHMM:TMhelixUniGene:At.22826UniGene:At.74032UniProt:Q9SJY7
Coordinates (TAIR10) chr2:-:9538400..9538795
Molecular Weight (calculated) 12582.90 Da
IEP (calculated) 3.92
GRAVY (calculated) 0.23
Length 131 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSKAMQALI FLGFLATSCL AQAPAPAPTT VTPPPTALPP VTAETPSPIA SPPVPVNEPT PAPTTSPTTS PVASPPQTDA PAPGPSAGLT PTSSPAPGPD
101: GAADAPSAAW ANKAFLVGTA VAGALYAVVL A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)