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AT2G47550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT4G02330.1); Has 2676 Blast hits to 2617 proteins in 319 species: Archae - 6; Bacteria - 600; Metazoa - 1; Fungi - 202; Plants - 1841; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G47550-MONOMEREC:3.1.1.11eggNOG:COG4677eggNOG:ENOG410IFP7
EMBL:AC002535EMBL:AY058099EMBL:BT002700EMBL:CP002685
EnsemblPlants:AT2G47550EnsemblPlants:AT2G47550.1entrez:819368Gene3D:1.20.140.40
Gene3D:2.160.20.10GeneID:819368Genevisible:O22256GO:GO:0004857
GO:GO:0005576GO:GO:0005618GO:GO:0030599GO:GO:0042545
GO:GO:0045330GO:GO:0045490Gramene:AT2G47550.1gramene_pathway:3.1.1.11
gramene_pathway:PWY-1081hmmpanther:PTHR31707hmmpanther:PTHR31707:SF38HOGENOM:HOG000217409
InParanoid:O22256InterPro:IPR000070InterPro:IPR006501InterPro:IPR011050
InterPro:IPR012334InterPro:IPR033131KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11
KEGG:ath:AT2G47550KO:K01051ncoils:CoilOMA:ARRFISM
PaxDb:O22256Pfam:O22256Pfam:PF01095Pfam:PF04043
PhylomeDB:O22256PIR:T00429PRIDE:O22256PRO:PR:O22256
PROSITE:PS00503ProteinModelPortal:O22256Proteomes:UP000006548RefSeq:NP_566103.1
scanprosite:PS00503SMART:SM00856SMR:O22256STRING:3702.AT2G47550.1
SUPFAM:SSF101148SUPFAM:SSF51126TAIR:AT2G47550UniGene:At.12430
UniGene:At.66383UniPathway:UPA00545UniProt:O22256
Coordinates (TAIR10) chr2:+:19509024..19511604
Molecular Weight (calculated) 61500.70 Da
IEP (calculated) 9.03
GRAVY (calculated) -0.21
Length 560 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQKLMFLFT LACLSSLPSP FISAQIPAIG NATSPSNICR FAPDPSYCRS VLPNQPGDIY SYGRLSLRRS LSRARRFISM IDAELDRKGK VAAKSTVGAL
101: EDCKFLASLT MDYLLSSSQT ADSTKTLSLS RAEDVHTFLS AAITNEQTCL EGLKSTASEN GLSGDLFNDT KLYGVSLALF SKGWVPRRQR SRPIWQPQAR
201: FKKFFGFRNG KLPLKMTERA RAVYNTVTRR KLLQSDADAV QVSDIVTVIQ NGTGNFTTIN AAIAAAPNKT DGSNGYFLIY VTAGLYEEYV EVPKNKRYVM
301: MIGDGINQTV ITGNRSVVDG WTTFNSATFI LSGPNFIGVN ITIRNTAGPT KGQAVALRSG GDLSVFYSCS FEAYQDTLYT HSLRQFYREC DVYGTVDFIF
401: GNAAVVLQNC NLYPRQPRKG QSNEVTAQGR TDPNQNTGTA IHGCTIRPAD DLATSNYTVK TYLGRPWKEY SRTVVMQTYI DGFLEPSGWN AWSGDFALST
501: LYYAEYNNTG PGSDTTNRVT WPGYHVINAT DASNFTVTNF LVGEGWIGQT GVPFVGGLIA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)