AT1G54890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Late embryogenesis abundant (LEA) protein-related | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Late embryogenesis abundant (LEA) protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) protein-related (TAIR:AT5G54370.1); Has 157 Blast hits to 155 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20463107..20464407 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38396.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.00 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||
| Length | 347 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKGDLRNGVY VGLVVMLYAC IVVVQLEAAL ETKTCFQRKS PCFLKKQTCP KQCPSFSPPN GSTKACVIDC FNPICKATCR NRKPNCNGKG SACLDPRFIG 101: GDGIVFYFHG KRDEHFALIS DVDFQVNARF IGLRPNGRAR DFTWIQSLGL IFGPNSKTFS LEATKAEKWD HQVDHLRLSY EGKEISLPKG DTSVWSPPLG 201: DYIKIERTSD INSVLVTLQD IAEIWINVVP VTKEDDIIHK YGIPEDDCFA HLEVQFRFLK LSSNVEGVLG RTYKEDFKNP AKPGVAMPVV GGEDKYRTAS 301: LLETSCNACV YSGGSRSLDK IEPLLLNQNT VDCTGGSSSG VGIFCRK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)