AT3G05390.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.451 extracellular 0.202 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G01240.1); Has 507 Blast hits to 498 proteins in 33 species: Archae - 4; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 493; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:1546585..1547976 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 54263.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.70 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 463 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGRTCLPRWR LGRLMAGLQV ILGLLVITVS LSCLYRFHSV GYFLQNEDTC NNIYTIKEVS SEGFDLKALH DRVDEVLEKM DNLYEKLEKT VKDMEKSKDG 101: SKKEMKKFLE DEVMKPFYYA HIGLRQIRLP KPEGIRNSTE KEEPLINKFL IEEIRQYITP KENRVGKINM FGTERVYNTI GHACALMKME LEKYMDYDVG 201: AYCDDDWNLA QKLMLNGCDP LPRRRCLTRA SMTYQKPYPI NESLWKLPDD RNVRWGNYQC RNFACLSSKN PKRGYTKCSG CFEMEKEKDK WVKNSSLLVD 301: FMIEDVLRVK PSEIRIGLDY GVGTGTFAAR MREKNVTIVT TALNLGAPFN EMIALRGLIP LYISLNQRLP FFDNTMDMIH TTGLMDGWID LLLMDFVLYD 401: WDRVLRPGGL LWIDRFFCKK KDLDDYMYMF LQFRYKKHKW AISPKSKDEV YLSALLEKPP RAI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)