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AT3G05390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.451
extracellular 0.202
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G01240.1); Has 507 Blast hits to 498 proteins in 33 species: Archae - 4; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 493; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEBDeggNOG:ENOG4111868EMBL:AC009606EMBL:AY649290
EMBL:CP002686EnsemblPlants:AT3G05390EnsemblPlants:AT3G05390.1entrez:819703
Gene3D:3.40.50.150GeneID:819703GO:GO:0008168Gramene:AT3G05390.1
hmmpanther:PTHR10108hmmpanther:PTHR10108:SF882InterPro:IPR004159InterPro:IPR029063
KEGG:00253+2.1.1.-KEGG:00270+2.1.1.-KEGG:00332+2.1.1.-KEGG:00340+2.1.1.-
KEGG:00350+2.1.1.-KEGG:00360+2.1.1.-KEGG:00380+2.1.1.-KEGG:00450+2.1.1.-
KEGG:00522+2.1.1.-KEGG:00624+2.1.1.-KEGG:00627+2.1.1.-KEGG:00860+2.1.1.-
KEGG:00940+2.1.1.-KEGG:00941+2.1.1.-KEGG:00942+2.1.1.-KEGG:00945+2.1.1.-
KEGG:00950+2.1.1.-KEGG:00981+2.1.1.-KEGG:ath:AT3G05390ncoils:Coil
OMA:FDMDREKPfam:PF03141Pfscan:PS51257PhylomeDB:Q9MA52
Proteomes:UP000006548RefSeq:NP_187190.1SUPFAM:SSF53335TAIR:AT3G05390
TMHMM:TMhelixUniGene:At.43378UniGene:At.50756UniProt:Q9MA52
Coordinates (TAIR10) chr3:-:1546585..1547976
Molecular Weight (calculated) 54263.30 Da
IEP (calculated) 8.70
GRAVY (calculated) -0.39
Length 463 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRTCLPRWR LGRLMAGLQV ILGLLVITVS LSCLYRFHSV GYFLQNEDTC NNIYTIKEVS SEGFDLKALH DRVDEVLEKM DNLYEKLEKT VKDMEKSKDG
101: SKKEMKKFLE DEVMKPFYYA HIGLRQIRLP KPEGIRNSTE KEEPLINKFL IEEIRQYITP KENRVGKINM FGTERVYNTI GHACALMKME LEKYMDYDVG
201: AYCDDDWNLA QKLMLNGCDP LPRRRCLTRA SMTYQKPYPI NESLWKLPDD RNVRWGNYQC RNFACLSSKN PKRGYTKCSG CFEMEKEKDK WVKNSSLLVD
301: FMIEDVLRVK PSEIRIGLDY GVGTGTFAAR MREKNVTIVT TALNLGAPFN EMIALRGLIP LYISLNQRLP FFDNTMDMIH TTGLMDGWID LLLMDFVLYD
401: WDRVLRPGGL LWIDRFFCKK KDLDDYMYMF LQFRYKKHKW AISPKSKDEV YLSALLEKPP RAI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)