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AT3G62280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G56670.1); Has 3192 Blast hits to 3150 proteins in 118 species: Archae - 0; Bacteria - 86; Metazoa - 0; Fungi - 17; Plants - 3087; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G62280-MONOMEREC:3.1.1.-eggNOG:ENOG410JAX9eggNOG:ENOG4111DPC
EMBL:AK221545EMBL:AL138651EMBL:BT012283EMBL:CP002686
EnsemblPlants:AT3G62280EnsemblPlants:AT3G62280.1entrez:825401Gene3D:3.40.50.1110
GeneID:825401Genevisible:Q6NLP7GO:GO:0005576GO:GO:0016042
GO:GO:0016788Gramene:AT3G62280.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF137
HOGENOM:HOG000237648InParanoid:Q6NLP7InterPro:IPR001087InterPro:IPR013830
iPTMnet:Q6NLP7KEGG:ath:AT3G62280OMA:IDFFCEHPaxDb:Q6NLP7
Pfam:PF00657Pfam:Q6NLP7PhylomeDB:Q6NLP7PIR:T48020
PRIDE:Q6NLP7PRO:PR:Q6NLP7ProteinModelPortal:Q6NLP7Proteomes:UP000006548
RefSeq:NP_191787.2SUPFAM:SSF52266TAIR:AT3G62280TMHMM:TMhelix
UniGene:At.34144UniProt:Q6NLP7
Coordinates (TAIR10) chr3:-:23049484..23051116
Molecular Weight (calculated) 40806.20 Da
IEP (calculated) 8.32
GRAVY (calculated) -0.03
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MDYTVSSLQC FFLVLCLSLL VCSNSETSYK SNKKPILINF GDSNSDTGGV LAGVGLPIGL PHGITFFHRG TGRLGDGRLI VDFYCEHLKM TYLSPYLDSL
101: SPNFKRGVNF AVSGATALPI FSFPLAIQIR QFVHFKNRSQ ELISSGRRDL IDDNGFRNAL YMIDIGQNDL LLALYDSNLT YAPVVEKIPS MLLEIKKAIQ
201: TVYLYGGRKF WVHNTGPLGC APKELAIHLH NDSDLDPIGC FRVHNEVAKA FNKGLLSLCN ELRSQFKDAT LVYVDIYSIK YKLSADFKLY GFVDPLMACC
301: GYGGRPNNYD RKATCGQPGS TICRDVTKAI VWDGVHYTEA ANRFVVDAVL TNRYSYPKNS LDRFW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)