AT1G14780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.981 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MAC/Perforin domain-containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MAC/Perforin domain-containing protein; CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin (MACPF) domain (InterPro:IPR020864); BEST Arabidopsis thaliana protein match is: MAC/Perforin domain-containing protein (TAIR:AT4G24290.2); Has 221 Blast hits to 220 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5091020..5093873 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69921.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.50 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||||||
| Length | 627 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRDGGDVIE TAVKSLGKGF DLTADFRLKY CKDGDGSAGD DRLVVLDQTQ NRELHIPGFG VFQNVSADIN CDKGERTRFR SDILDFNKMS EYFNQRSSVT 101: GKIPSGNFNA TFGFQSGSWA TDAANVKSLG LDASVVTLFN LHIHNPNRLR LTDRVRNAVP SSWDPQLLAR FIERYGTHVI TGVSVGGQDV VVVRQDKSSD 201: LDNDLLRHHL YDLGDQLFTG SCLLSTRRLN KAYHHSHSQP KFPEAFNVFD DKQTVAFNNF SINSQNGITV ICAKRGGDGR AKSHSEWLIT VPDKPDAINF 301: NFIPITSLLK DVPGSGLLSH AMSLYLRYKP PLMDLQYFLD FSGPRAWAPV HNDLPFGAAP NMASAYPALH INFMGPKLYV NTTPVTSEKN PVTGMRFFLE 401: GKKCNRLAIH LQHLDNTRTT VGEKITDEHI WRGSDQITDN DRYFEPLNGK KFSHVCTVPV KYDPNWIKTT SNHKSQNDVA FIVTGAQLEV KKHGSKSVLH 501: LRLRYTKVSD HYVVQNSWVH GPIGTSQKSG IFSSMSMPLT SGSVHHNMIQ KDKNEVVLDS GVFPGGPPVP ANNKIVKFVD LSQLCRGPQH SPGHWLVTGV 601: RLYLDKGKLC LHVKFALLHR QRLLVSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)