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AT5G55050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G50400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G55050-MONOMEREC:3.1.1.-eggNOG:COG3240eggNOG:ENOG410IVKR
EMBL:AB017059EMBL:AY072081EMBL:AY142585EMBL:CP002688
EnsemblPlants:AT5G55050EnsemblPlants:AT5G55050.1entrez:835596Gene3D:3.40.50.1110
GeneID:835596Genevisible:Q9FIA1GO:GO:0005576GO:GO:0016042
GO:GO:0016298Gramene:AT5G55050.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF236
HOGENOM:HOG000237649InParanoid:Q9FIA1InterPro:IPR001087InterPro:IPR008265
InterPro:IPR013830KEGG:ath:AT5G55050OMA:MPTNNTPPaxDb:Q9FIA1
Pfam:PF00657Pfam:Q9FIA1PhylomeDB:Q9FIA1PRIDE:Q9FIA1
PRO:PR:Q9FIA1PROSITE:PS01098ProteinModelPortal:Q9FIA1Proteomes:UP000006548
RefSeq:NP_200316.1scanprosite:PS01098SUPFAM:SSF52266TAIR:AT5G55050
UniGene:At.29465UniProt:Q9FIA1
Coordinates (TAIR10) chr5:+:22337745..22339741
Molecular Weight (calculated) 41449.70 Da
IEP (calculated) 8.69
GRAVY (calculated) -0.22
Length 376 amino acids
Sequence (TAIR10)
(BLAST)
001: MPTNNTPFLT IFLLFLGLLR FDSFPGLEAA TGKLASIPGL YVFGDSLVDA GNNNYLPISI SKANYPHNGV DFPNKKPTGR FCNGKNAADA IAEKFGLPLP
101: PPYLSLRGLL KREKRKSAAV TGVNFASGGA GIFNSSDQKL GQAIPLSKQV NNWLSIHEEV MKLEPSAAQL HLSKSLFTVV IGSNDLFDYF GSFKLRRQSN
201: PQQYTQLMAD KLKEQLKRIH DSGARRFLII GVAQIGCTPG KRAKNSTLHE CDEGANMWCS LYNEALVKML QQLKQELQGS ITYTYFDNYK SLHDIISNPA
301: RYGFADVTSA CCGNGELNAD LPCLPLAKLC SDRTKHLFWD RYGHPTEAAA RTIVDLMLTD DTHYSSPITL TQLVST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)