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AT3G20500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : purple acid phosphatase 18
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
purple acid phosphatase 18 (PAP18); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 22 (TAIR:AT3G52820.1); Has 2123 Blast hits to 2103 proteins in 464 species: Archae - 3; Bacteria - 774; Metazoa - 209; Fungi - 79; Plants - 766; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G20500-MONOMEREC:3.1.3.2eggNOG:COG1409eggNOG:KOG1378
EMBL:AF448725EMBL:AP000410EMBL:AY062488EMBL:AY093272
EMBL:AY297742EMBL:CP002686EnsemblPlants:AT3G20500EnsemblPlants:AT3G20500.1
entrez:821596Gene3D:2.60.40.380Gene3D:3.60.21.10GeneID:821596
Genevisible:Q9LJU7GO:GO:0003993GO:GO:0005576GO:GO:0016311
GO:GO:0046872Gramene:AT3G20500.1gramene_pathway:3.1.3.2gramene_pathway:PWY-6348
hmmpanther:PTHR22953hmmpanther:PTHR22953:SF5HOGENOM:HOG000238330InParanoid:Q9LJU7
InterPro:IPR004843InterPro:IPR008963InterPro:IPR015914InterPro:IPR025733
InterPro:IPR029052KEGG:ath:AT3G20500OMA:NSTHASWPaxDb:Q9LJU7
Pfam:PF00149Pfam:PF14008Pfam:PF16656Pfam:Q9LJU7
PhylomeDB:Q9LJU7PRIDE:Q9LJU7PRO:PR:Q9LJU7ProteinModelPortal:Q9LJU7
Proteomes:UP000006548RefSeq:NP_188686.2SMR:Q9LJU7STRING:3702.AT3G20500.1
SUPFAM:SSF49363SUPFAM:SSF56300TAIR:AT3G20500tair10-symbols:ATPAP18
tair10-symbols:PAP18TMHMM:TMhelixUniGene:At.24149UniProt:Q9LJU7
Coordinates (TAIR10) chr3:+:7157926..7160244
Molecular Weight (calculated) 49872.50 Da
IEP (calculated) 6.20
GRAVY (calculated) -0.54
Length 437 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKWGILLLV TLSVSIIFTS AAADDYVRPK PRETLQFPWK QKSSSVPEQV HISLAGDKHM RVTWVTNDKS SPSFVEYGTS PGKYSYLGQG ESTSYSYIMY
101: RSGKIHHTVI GPLEADTVYY YRCGGEGPEF HLKTPPAQFP ITFAVAGDLG QTGWTKSTLD HIDQCKYAVH LLPGDLSYAD YMQHKWDTFG ELVQPLASVR
201: PWMVTQGNHE KESIPFIVDE FVSFNSRWKM PYEESGSNSN LYYSFEVAGV HAIMLGSYTD YDRYSDQYSW LKADLSKVDR ERTPWLIVLF HVPWYNSNNA
301: HQHEGDEMMA EMEPLLYASG VDIVFTGHVH AYERTKRVNN GKSDPCGPVH ITIGDGGNRE GLARKYKDPS PEWSVFREAS FGHGELQMVN STHALWTWHR
401: NDDDEPTRSD EVWLNSLVNS GCLKKRPQEL RKMLLEP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)