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AT3G52470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24030099 (2013): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:20843791 (2010): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: NDR1/HIN1-like 12 (TAIR:AT2G35960.1); Has 921 Blast hits to 921 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 921; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J8XKeggNOG:ENOG41119PUEMBL:AL050300EMBL:AY080785
EMBL:AY088695EMBL:AY114041EMBL:CP002686EnsemblPlants:AT3G52470
EnsemblPlants:AT3G52470.1entrez:824412GeneID:824412GO:GO:0009506
GO:GO:0016021Gramene:AT3G52470.1hmmpanther:PTHR31415hmmpanther:PTHR31415:SF2
HOGENOM:HOG000238706InterPro:IPR004864KEGG:ath:AT3G52470OMA:THPGFFL
Pfam:PF03168PhylomeDB:Q9SVC8PIR:T08452Proteomes:UP000006548
RefSeq:NP_190815.1STRING:3702.AT3G52470.1TAIR:AT3G52470TMHMM:TMhelix
UniGene:At.20394UniProt:Q9SVC8
Coordinates (TAIR10) chr3:+:19450750..19451376
Molecular Weight (calculated) 23099.40 Da
IEP (calculated) 10.21
GRAVY (calculated) 0.18
Length 208 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKDCGNHGG GKEVVVRKLC AAIIAFIVIV LITIFLVWVI LRPTKPRFVL QDATVYAFNL SQPNLLTSNF QVTIASRNPN SKIGIYYDRL HVYATYMNQQ
101: ITLRTAIPPT YQGHKEVNVW SPFVYGTAVP IAPYNSVALG EEKDRGFVGL MIRADGTVRW KVRTLITGKY HIHVRCQAFI NLGNKAAGVL VGDNAVKYTL
201: ANKCSVNV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)