AT2G01150.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.998 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : RING-H2 finger protein 2B | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a RING-H2 finger protein that is expressed in vascular tissue, root tips, embryos and pistils. | ||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
RING-H2 finger protein 2B (RHA2B); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger A2A (TAIR:AT1G15100.1); Has 8536 Blast hits to 8514 proteins in 269 species: Archae - 0; Bacteria - 0; Metazoa - 2151; Fungi - 713; Plants - 4534; Viruses - 16; Other Eukaryotes - 1122 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:100703..101146 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 16241.60 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.16 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.07 | ||||||||||||||||||||||||||||||||||||
Length | 147 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGLQGQLSDV SSDSIPLMLL ALLATFFRHV RSLLLFPSSA PVVVVTSNLS VLADQLNLNR LFSYRYSDNA ASDCIVCLSK LKTGEEVRKL DCRHVFHKQC 101: LEGWLQHLNF NCPLCRSPLL PHHHQGHGSD ASISAFPLRS TSTASSH |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)