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AT5G42570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24030099 (2013): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22550958 (2012): plastid
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : B-cell receptor-associated 31-like
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
B-cell receptor-associated 31-like; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: B-cell receptor-associated protein 31-like (TAIR:AT1G11905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5374eggNOG:KOG1962EMBL:AY054493EMBL:BT024606
EMBL:CP002688EnsemblPlants:AT5G42570EnsemblPlants:AT5G42570.1entrez:834264
GeneID:834264GO:GO:0005774GO:GO:0005783GO:GO:0006886
GO:GO:0009506GO:GO:0016021Gramene:AT5G42570.1hmmpanther:PTHR12701
hmmpanther:PTHR12701:SF18InterPro:IPR008417KEGG:ath:AT5G42570KO:K14009
ncoils:CoilOMA:QVLASKHPANTHER:PTHR12701Pfam:PF05529
PhylomeDB:Q93XZ7Proteomes:UP000006548RefSeq:NP_568607.1SMR:Q93XZ7
STRING:3702.AT5G42570.1TAIR:AT5G42570TMHMM:TMhelixUniGene:At.26944
UniProt:Q93XZ7
Coordinates (TAIR10) chr5:-:17021459..17022497
Molecular Weight (calculated) 24566.30 Da
IEP (calculated) 9.95
GRAVY (calculated) -0.13
Length 218 amino acids
Sequence (TAIR10)
(BLAST)
001: MIHLLYTVIF AEMALILLLL FKTPLRKLII LTFDRIKRGR GPVVVKTIGT TVFVVLLSSI YSLVNIQRRS EDGAVLNPTD QVLASKHLLE ASLMGFVLFL
101: SLMIDRLHHY IRELRLLRKT METAKKQNRG FEDGKTTSGE EVKALGEEIA ALKAKIKTLE SESESKGKEL KGAQGETEAL RKQADGFLME YDRLLEDNQN
201: LRNQLESIGH SPEGKKGM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)