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AT4G38790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ER lumen protein retaining receptor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ER lumen protein retaining receptor family protein; FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT2G21190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5196eggNOG:KOG3106EMBL:AK229378EMBL:AY086142
EMBL:CP002687EnsemblPlants:AT4G38790EnsemblPlants:AT4G38790.1entrez:830034
GeneID:830034GO:GO:0005783GO:GO:0006621GO:GO:0016021
GO:GO:0046923Gramene:AT4G38790.1hmmpanther:PTHR10585hmmpanther:PTHR10585:SF10
HOGENOM:HOG000231400InterPro:IPR000133KEGG:ath:AT4G38790OMA:TSHIMIN
PANTHER:PTHR10585Pfam:PF00810PhylomeDB:Q8LD89PRINTS:PR00660
Proteomes:UP000006548RefSeq:NP_568047.1STRING:3702.AT4G38790.1TAIR:AT4G38790
TMHMM:TMhelixUniGene:At.2827UniGene:At.31148UniProt:Q8LD89
Coordinates (TAIR10) chr4:+:18111426..18112977
Molecular Weight (calculated) 30815.60 Da
IEP (calculated) 9.16
GRAVY (calculated) 0.71
Length 273 amino acids
Sequence (TAIR10)
(BLAST)
001: MKATTKTPIH VVWSWVRRQP PKVKAFLAVV TGMAALVLLR FIVHDHDNLF VAAEAVHSIG ICVLIYKLMK EKTCAGLSLK SQELTAIFLA VRLYCSIVME
101: YDIHTILDLA TLGTTLWVIF MIRFKLRASY MEDKDNFPLY YVLAPCVALA VFIHPSTSHN IINRISWALC VYLEAVSVLP QLRVMQNTKI VEPFTAHYVF
201: ALGVARFLSC AHWVLQVVDT RGRLLVALGY GLWPSMVLIS EIVQTFILAD FCYYYVKSVF GGQLVLRLPS GVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)