AT3G52460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.899 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT2G27260.1); Has 13276 Blast hits to 8377 proteins in 712 species: Archae - 22; Bacteria - 1322; Metazoa - 3676; Fungi - 1758; Plants - 4244; Viruses - 417; Other Eukaryotes - 1837 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19446970..19447872 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 33153.40 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.33 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||
| Length | 300 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPSPPEEETQ PKPDTGPGQN SERDINQPPP PPPQSQPPPP QTQQQTYPPV MGYPGYHQPP PPYPNYPNAP YQQYPYAQAP PASYYGSSYP AQQNPVYQRP 101: ASSGFVRGIF TGLIVLVVLL CISTTITWLV LRPQIPLFSV NNFSVSNFNV TGPVFSAQWT ANLTIENQNT KLKGYFDRIQ GLVYHQNAVG EDEFLATAFF 201: QPVFVETKKS VVIGETLTAG DKEQPKVPSW VVDEMKKERE TGTVTFSLRM AVWVTFKTDG WAARESGLKV FCGKLKVGFE GISGNGAVLL PKPLPCVVYV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)