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AT3G23820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : UDP-D-glucuronate 4-epimerase 6
Curator
Summary (TAIR10)
UDP-D-glucuronate 4-epimerase
Computational
Description (TAIR10)
UDP-D-glucuronate 4-epimerase 6 (GAE6); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 2 (TAIR:AT1G02000.1); Has 39778 Blast hits to 39772 proteins in 2962 species: Archae - 777; Bacteria - 23781; Metazoa - 723; Fungi - 392; Plants - 1153; Viruses - 36; Other Eukaryotes - 12916 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0451eggNOG:ENOG410IU3FEMBL:AF083691EMBL:JQ937233
EnsemblPlants:AT3G23820EnsemblPlants:AT3G23820.1entrez:821965ExpressionAtlas:I1VCA6
Gene3D:3.40.50.720GeneID:821965GO:GO:0005975GO:GO:0016021
GO:GO:0016857Gramene:AT3G23820.1gramene_pathway:5.1.3.6gramene_pathway:PWY-4861
gramene_plant_reactome:1119620gramene_plant_reactome:6875728hmmpanther:PTHR10366hmmpanther:PTHR10366:SF431
InterPro:IPR008089InterPro:IPR016040KEGG:ath:AT3G23820KO:K08679
OMA:IFKEQRAPaxDb:I1VCA6Pfam:PF16363Pfam:Q9LIS3
PhylomeDB:I1VCA6PRIDE:I1VCA6PRINTS:PR01713ProteinModelPortal:I1VCA6
RefSeq:NP_189024.1SMR:I1VCA6STRING:3702.AT3G23820.1SUPFAM:SSF51735
tair10-symbols:GAE6TMHMM:TMhelixUniGene:At.24934UniGene:At.67131
UniGene:At.71799UniProt:I1VCA6UniProt:Q9LIS3
Coordinates (TAIR10) chr3:+:8603645..8605027
Molecular Weight (calculated) 50572.40 Da
IEP (calculated) 10.09
GRAVY (calculated) -0.23
Length 460 amino acids
Sequence (TAIR10)
(BLAST)
001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)